Skip to main content

Regulation of germ layer formation by pluripotency factors during embryogenesis


The classical pluripotency factors Oct4, Klf4, Sox2, and Nanog are required for the maintenance of pluripotency and self-renewal of embryonic stem (ES) cells and can reprogram terminally differentiated cells into a pluripotent state. Alteration in the levels of these factors in ES cells will cause differentiation into different lineages, suggesting that they are critical determinants of cell fates. These factors show dynamic expression patterns during embryogenesis, in particular in the pluripotent or multipotent cells of an early stage embryo, implying that they are involved in the cell fate decision during early embryonic development. Functions and the underlying molecular mechanisms have been extensively studied for these factors in ES cells under cultured conditions. However, this does not mean that the results also hold true for intact embryos. In the review, I have summarized and discussed the findings on the functions and the underlying mechanisms of the classical pluripotency factors during early embryogenesis, in particular during germ layer formation.


Pluripotency and self-renewal are two distinct features of mammalian embryonic stem (ES) cells. This means that ES cells, on one hand, are capable of differentiation into all germ layer lineages including germ cells, and on the other, can generate equivalent daughter cells. ES cells or the inner cell mass of a morula embryo express numerous genes, some of which code for transcription factors or transcriptional co-regulators. Among them, a few transcription factors, primarily Oct4, Sox2, Klf4, cMyc, Nanog, and Lin28, are required for the maintenance of pluripotency and self-renewal of ES cells [16]. Moreover, these factors are able to reprogram terminally differentiated somatic cells into a pluripotent state [712]. Manipulation of the levels of these factors in ES cells will result in differentiation toward to specific lineages [1, 1315]. Therefore, these factors play critical roles in cell fate decision. In ES cells, these factors comprise a core regulatory network for the maintenance of pluripotency and self-renewal [16, 17]. Besides these “classical” pluripotency factors, more proteins have been elucidated to play a role in the maintenance of ES cell pluripotency and self-renewal, primarily via the integration to the core regulatory network, such as Tcf3, Wdr5, esBAF, Ring1A/B, Zfp296, Nr5a2, Esrrb, etc. [1826].

The development of an animal embryo from a fertilized egg is a process of cell differentiation and movements. During vertebrate embryogenesis, the early embryonic cells are induced to differentiate into the three germ layers in a strict spatiotemporal manner. Under the regulation of inducing and patterning signals, the three germ layers will subsequently turn into all types of tissues and organs. With the progress of embryonic development, the potential of differentiation of early embryonic cells decreases gradually, i.e. the loss of pluripotency. The procedure resembles the differentiation of ES cells. Pluripotency factors are present in early cleavage embryos. It is plausible that these factors play important roles in embryonic development. Nevertheless, the functions of pluripotency factors inferred from ES cells that are cultured under artificial conditions don’t necessarily reflect their functions in intact embryos. Moreover, deletion of these genes in mouse are usually embryonic lethal and makes further functional analysis difficult in embryos. The studies with other model organisms especially Xenopus or zebrafish have provided profound insights into the functions of these factors during early embryogenesis. In this review, I will focus on the regulatory effects of the 'classical' pluripotency factors on early embryonic development and sum up briefly the functions of some of the ‘nonclassical’ factors.


Oct4 is a transcription factor in the POU family of subclass V (POU-V). It is the key factor in the regulatory circuitry that governs pluripotency and self-renewal of ES cells. During mouse embryogenesis, Oct4 transcript is transcribed in unfertilized oocytes. The maternal transcript is soon degraded after fertilization. The zygotic transcription shows a dynamic pattern, with specific localization to the cells of inner cell mass (ICM) of blastocyst and primitive ectoderm at implantation [27]. After day 8, its transcription in somatic cells is silenced, but it is only transcribed in primordial germ cells (PGCs) [28, 29]. In Xenopus, there are three POU-V factors, Oct60, Oct25 and Oct91 [3032]. However, the genes for these factors are expressed in distinct patterns during embryogenesis. Oct60 is a maternal transcript, which is degraded soon after mid-blastula transition (MBT). The zygotic transcript is present only in very low level. Oct25 is transcribed both maternally and zygotically, with the peak level of transcription present during gastrulation. While in the case of Oct91, only zygotic transcription exists [30] (Figure 1). Whole mount in situ hybridization (WISH) have demonstrated that in oocytes and cleavage stage embryos, transcripts are only detected in the animal hemispheres [33]. During blastula and gastrula stages, they are present in the animal and marginal zones [33, 34] (Figure 1). At neurula stage, expression of Oct25 is restricted to two narrow stripes within the neural plates, with one stripe in each side of the midline. This expression disappears in tailbud embryos. Instead, it is specifically expressed at the tail tip [33, 34]. Oct91 has an identical spatial expression pattern to Oct25. However, they differ in the levels of transcription. Using WISH, it has been not able to reveal the expression of either Oct60, Oct25 or Oct91 in the PGCs. Nevertheless, it can be displayed with RT-PCR that Oct91, but not Oct60 or Oct25, is activated specifically in the PGCs in Xenopus neurula embryos, when somatic fates are committed. This suggests that among the three Oct4 homologous genes, Oct91 is orthologous to mammalian Oct4[35]. Although the spatiotemporal expression pattern of each Xenopus POU-V gene is different from Oct4 in mouse embryos, the combined expression of the three POU-V genes corresponds to that of mouse Oct4. The three POU-V genes are also conserved in Xenopus tropicalis. They are arranged in a cluster and the temporal order of expression is reverse to their orientation within the cluster. Moreover, the three genes are in a syntenic region conserved between Xenopus, mouse and zebrafish [33, 36]. They obviously arose by duplication of a common ancestor. Except Xenopus, only one Oct4 homologous gene has been detected in other organisms, such as zebrafish (Pou2) [37], Axolotl [38], or chick [39]. The expression patterns of POU-V genes in these animals are not identical, though, the common feature is that they are expressed in the pluripotent and multipotent cells during early during early embryogenesis, and later on, in the germ cells.

Figure 1
figure 1

Schematic illustration of spatiotemporal expression of Oct60 , Oct25 and Oct91 during Xenopus embryogenesis. (A) Temporal expression of Oct60, Oct25 and Oct91 in different stages of development. Reproduced from [30] with minor modifications. (B) Spatial distribution of Oct60, Oct25 and Oct91 transcripts in fertilized egg, blastula and gastrula embryos. Heavier color represents higher level of transcription. bc: blastocoel; bl: dorsal blastopore lip.

A few studies have shown that Xenopus POU-V factors regulate the signaling cascade of germ layer induction and body axis patterning during embryogenesis. In a yeast one-hybrid screening for the factors that bind to and regulate the target gene of BMP signaling pathway (see Glossary), Xvent2B, Oct25 was identified as such a regulator [34]. It binds to Xvent2B promoter and interacts with Xvent2 protein, thus forming a regulatory complex on Xvent2B promoter. Takebayashi-Suzuki et al. [40] also reported that Oct25 regulates the competence of ectodermal cells to BMP signaling, thus playing a role in the fate choice of ectoderm. Studies by Cao et al. [36] and by Snir et al. [41] have demonstrated that Xenopus POU-V factors promotes neuroectoderm formation but inhibits neuronal differentiation. In addition to the regulatory effect on BMP signaling, both overexpression and knockdown experiments display that the Xenopus POU-V factors prevent early embryonic cells from differentiation into mesoderm and endoderm (combined as mesendoderm hereafter) germ layers [34, 36]. This is in agreement with that Oct4 is responsible for the maintenance of undifferentiated state of ES cells. The function of Xenopus POU-V factors in embryos can be explained by that they regulate both maternal and zygotic signals being responsible for the induction of germ layer differentiation. Biochemical data demonstrate that Oct25 blocks the activities of maternal VegT and β-catenin [42], which initiate the zygotic signaling cascades for mesendoderm formation. Oct25 interacts with VegT or Tcf3, a signal transducer of Wnt/β-catenin signaling, thus form repression complexes on the promoters of VegT or β-catenin target genes [42]. Another study demonstrates that Oct4 also inhibits Wnt/β-catenin signaling in ES cells and blocks Wnt8-induced secondary axis formation (see Glossary) in Xenopus embryos [43]. Nevertheless, the underlying mechanism seems to be different since Oct4 interferes Wnt/β-catenin signaling via destabilization of β-catenin [43]. It is not known in ES cells, whether Oct4 and Tcf3 also form a repression complex and regulates Wnt/β-catenin target gene expression. One possibility accounting for the discrepancy is the intrinsic differences between signals in ES cells and Xenopus early embryonic cells. Nodal/Activin pathway, which is initiated by maternal VegT and β-catenin in Xenopus embryos, is the ultimate inducing signal for mesendoderm formation. Xenopus POU-V factors also show significant repression effect on Nodal/Activin activity in both whole embryos and animal caps [36, 44]. Biochemical analysis reveals that there is an intrinsic connection between Oct25 and Nodal/Activin signaling. Oct25 interacts with the signal transducers of Nodal/Activin signaling, e.g. FoxH1 (FAST1), thus blocking the transcription of Nodal/Activin target genes [44]. In addition to the regulatory role in mesendoderm formation, a function in mediating early morphogenesis is also implied for Xenopus POU-V factors in a recent work [45]. In zebrafish, depletion of both maternal and zygotic zOct4 (also named Spiel-ohne-grenzen (Spg) or Pou2) leads to delay of epiboly (see Glossary) and defect in body axis patterning [4648], resembling the effect of knockdown of POU-V in Xenopus[36]. In zebrafish embryos, mutation for maternal-zygotic spg (MZspg) leads to delay of gastrulation, failure of endoderm formation and accordingly, failure of gene expression for endoderm specification. However, neuroectoderm, mesoderm and germ cells can still form in the mutant embryos [46, 47]. Khan et al. [49] report that the active (VP-) or repressive (en-) form of zOct4 in zebrafish embryos exhibits different effects on mesendoderm formation. When the endogenous zOct4 activity was inhibited with an inducible, repressive form of zOct4 at different stages, different results were observed. Inhibition from midblastula stage leads to enhanced endoderm formation at the cost of mesoderm, opposite to the MZspg phenotype. On the contrary, inhibition from late blastula promotes mesoderm formation at the expense of endoderm [49]. Similarly, injection of zOct4 at different doses or repression of zOct4 activity at mid- or late blastula leads to different effects on dorsoventral patterning or convergent-extension movements [50] (see Glossary). These results suggest that the functions of Oct4 during embryogenesis are rather complicated. It will be interesting to investigate the effects of microinjection of zebrafish pou2 into Xenopus embryos. In Oct4 null ES cells, Xenopus POU-V factors are able to substitute Oct4 to retain self-renewal to different degrees, in contrast, zebrafish Oct4/Pou2/Spg is not [33]. These imply that POU-V proteins in different organisms have both common and distinct functions.

In Xenopus, overexpression of each of the three Xenopus POU-V factors or mouse Oct4 generates similar effects on mesendoderm differentiation. Moreover, Oct60 and Oct25 are exchangeable in rescue experiments [36]. This raises the question which one among the three POU-V factors is the orthologue of mammalian Oct4. Two pieces of evidence support that Oct91 is more likely to be the orthologue. One is that only Oct91 is expressed in the germline of Xenopus neurula embryos when somatic Oct91 expression is silenced [35]. The other piece of evidence is that Oct4-null ES cells transfected with Oct91 plasmid show the best rescuing effect compared to Oct60 or Oct25 transfection [33].

The POU-V transcription factors are characterized by a unique POU-specific domain (POUs) located at the N-terminal region and a POU homeodomain (POUh) at the C-terminal region, which are joined by a linker region [51]. The two domains are responsible for the binding of the protein to the octamer motif ATGCAAAT on the promoter of target genes, with the POUs binding to the ATGC half-site and the POUh binding to the AAAT half-site [48]. Cao et al. [52] analyzed in detail the contribution of the two domains to the function of Oct25. Overexpression of a series of deletion mutants in Xenopus embryos clearly showed the difference of these domains. The mutant lacking both the POUs and POUh loses its activity in regulation of germ layer formation and body axis patterning. Deletion of the POUh domain from the protein does not change its activity significantly in overexpression assays. In contrast, deletion of the complete POUs leads to a mutant that has no effect on embryogenesis. It is interesting that partial deletion, alteration of the order of a few amino acids, or point mutation of a single amino acid in the POUs results in the reversal of the protein activity. Overexpression of such mutants in embryos leads to the promotion of mesendoderm differentiation, dorsalization (see Glossary) of body axis and correspondingly, the upregulation of genes such as Sox17α, MyoD, Sox2, Chordin, Goosecoid, etc. Moreover, Oct60, Oct91 or mouse Oct4 with such mutations display similar activity to Oct25 mutants [52]. Therefore, the integrity of the POUs structure is critical for the protein function. The effect of the POUs mutant proteins on embryogenesis is also a confirmation for the function of endogenous POU-V proteins in Xenopus embryos. Since the molecular mechanisms underlying the function of POU-V during embryogenesis or in ES cells have been not well understood, the dominant-negative mutant might be a useful tool to elucidate such mechanisms.

Based on Xenopus study, we propose a model for the germ layer formation (Figure 2). Germ layers are formed in strict spatiotemporal patterns. The signals that maintain the undifferentiated state of early embryonic cells, typically POU-V factors, localize primarily to the animal half of embryos, where they promote neuroectoderm formation and restrict the mesendoderm inducing signals to the correct location. Maternal VegT is confined only to the vegetal region of early embryos, and overlaps with maternal β-catenin in the dorsal-vegetal cells. VegT activates ligand genes of Nodal/Activin signaling, which subsequently induces mesendoderm differentiation. β-catenin enhances transcription of Nodal/Activin ligand genes, thus establishing a Nodal/Acvtivin gradient along the dorsoventral axis. Meanwhile, it also activates signaling cascades for the formation of the organizer. There is also low abundance of POU-V expression in vegetal region. Here they serve to control VegT and β-catenin activities, such that differentiation of germ layers can occur correctly. Hence, the regulation of differentiation signals by the pluripotency factor POU-V establishes a balance of the two types of signals. The balance is critical for the differentiation and patterning of germ layers. Disruption of the balance will lead to the deviation of spatiotemporal patterns of normal germ layer formation.

Figure 2
figure 2

Correlation between pluripotency factors and differentiation signals during Xenopus germ layer formation. Germ layers are formed in strict spatiotemporal patterns. Either POU-V factors or germ layer inducing signals have specific localizations and exhibit different levels of activities during the process of germ layer formation of Xenopus embryos. POU-V factors antagonize the differentiation signals, so as to ensure that germ layer formation can occur in the correct spatiotemporal patterns (See text for details). An: animal pole; Vg: vegetal pole; D: dorsal side; V: ventral side. Reproduced from [42] with modifications.


Nanog was identified in a screening for the factors that maintain ES cell pluripotency and self-renewal [53] and in a screening for factors that underlie pluripotency in both ICM and ES cells independent of LIF/Stat3 [54]. During mouse embryogenesis, Nanog expression is restricted to pluripotent tissues such as the ICM of early blastocysts and in the epiblast of late blastocysts [53, 55]. It is also specifically expressed in mouse germ cells [56]. Nanog-null embryos develop no epiblast or extraembryonic ectoderm [54], suggesting that Nanog is required for early embryonic development. During zebrafish embryogenesis, Nanog is a maternal transcript and zygotic expression persists through early cleavage to 9h post-fertilization, with peak level of transcription occurring during gastrulation [57]. Genomic analysis, database mining or screening failed to identify a Nanog homolog in Xenopus, suggesting that Nanog is lost in the genus during evolution [5759], although Nanog orthologues have been known in other amphibians such as Axolotl [60]. The works of Schuff et al. [57] and Scerbo et al. [59] suggest that Xenopus might use the Vent1/2 (Ventx) transcription factors, which are known to play key roles in the ventralization of body axis [61], as alternatives to Nanog. Vent1/2 and Nanog are members of the BarH subfamily of homeodomain proteins and share some common features [57, 59]. Overexpression of zebrafish Nanog (zNanog), mouse Nanog (mNanog) or Xenopus Vent1/2 in Xenopus embryos all leads to similar phenotype [57, 59]. Detailed analysis demonstrates that the Vent1/2 are in fact not mere ventralizing factors. Like Nanog in mouse ES cells, Vent1/2 are also required for the maintenance of uncommitted status of early embryonic cells [59]. It is still in debate whether or not Vent1/2 and Nanog are exchangeable in function. Scerbo et al. [59] report that mNanog rescues specifically Xenopus Vent1/2 morphant, while another study shows a different result [57]. Despite the discrepancy, both studies agree that Vent1/2 and Nanog genes are related and that Ventx1/2 and mNanog serve comparable functions during embryogenesis.

A few studies including the above-mentioned ones focus on the functional homology of Nanog or Nanog-like proteins in different species [39, 57, 59, 60]. Nevertheless, the function of Nanog during germ layer formation has been less understood. The only existing data don’t agree well. One typical study shows that zNanog regulates endoderm formation via direct activation of the transcription of the homeobox domain factor Mxtx2, which in turn specifies the yolk syncytial layer that emits signals for endoderm induction [62]. However, overexpression of mNanog, zNanog or Vent1/2 in Xenopus embryos results in the inhibition of expression of endoderm marker genes [57, 59]. Moreover, most mesoderm and ectoderm marker genes are also downregulated [57, 59]. The disparity might be due to the difference in signals regulating germ layer formation in Xenopus and zebrafish, or due to the difference in experimental setup. Nevertheless, more efforts are required to characterize the functions of Nanog during embryogenesis.


Klf4 is a member in the family of Kruppel-like factors (Klf). All these transcription factors contain three highly conserved classical Cys2/His2 zinc-fingers at the carboxyl terminus and transcriptional regulatory domain at the amino terminus of the protein. The zinc-fingers are responsible for the binding to the CACCC-box in the DNA. Klf family consists of 17 members (Klf1-Klf17), which are involved in many biological processes such as proliferation, apoptosis, differentiation and development [63, 64]. The clue that Klf4 is a pluripotency factor is manifested by the induced pluripotent stem cells (iPS) with defined factors including Klf4 [7]. It is also a component of the regulatory circuitry required for the maintenance of pluripotency and self-renewal [22]. In agreement with this function, Klf4 is transcribed in ES cells [15]. During mouse embryogenesis, Klf4 transcript is present in embryos as early as at E4.5 (late blastocyst), and the transcription persists in later stages of development [65]. It is not clear whether Klf4 transcription is localized, for example, to the ICM, or is ubiquitous in blastocyst, nor is it not known whether Klf4 is transcribed during earlier stages of mouse embryogenesis. Microarray data suggest that there is little maternal Klf4 transcript in mammals [66]. In contrast, Klf4 was identified as maternal transcript in fish and frog [67, 68]. This might be due to the divergence of gene regulation between lower and high vertebrates during evolution. Zygotic transcription was also observed during early embryogenesis of fish and frog [67, 68]. It seems that Klf4 in mice does not participate in germ layer formation or body axis patterning during early embryogenesis, because Klf4−/− mice just show the failure in establishing proper skin barrier function, which eventually leads to the death of embryos shortly after birth [69]. It has been reported that zebrafish Klf4 is involved in mesendoderm differentiation, hatching, and erythropoiesis [70, 71]. However, it is worthwhile to mention here that some reported expression patterns or functions of zebrafish Klf4 could have been assigned improperly [7072]. Re-examination of the sequence of zebrafish Klf4 used in these studies (Accession number: AF392994) displayed that the protein encoded by the gene might not be the genuine orthologue of mammalian Klf4. Another different sequence in the database (Accession number: NM_001113483) shows much bigger homology to mammalian Klf4. Comparison of the expression patterns of Klf4 in different organisms in these studies also reveals the uncertainty of a true Klf4 orthologue [7072]. Moreover, the function of zebrafish ‘Klf4’ in erythropoiesis is reminiscent of the function of Neptune, or Klf17, in Xenopus[73]. A similar case is that a Xenopus cDNA in database (Accession number: NM_001086359) is mistakenly assigned as Klf4 since the amino acid sequence encoded by the cDNA has the highest similarity to Xenopus Neptune [68]. Recently, Cao and colleagues [68] describe the identification of Klf4 orthologue in Xenopus (Accession number: JN126325) and investigation of its functions during germ layer formation and body axis patterning. During Xenopus embryogenesis, Klf4 is transcribed both maternally and zygotically. The transcript is ubiquitous but differs in abundance in different regions of gastrulating embryos [68]. Gain of Klf4 function in Xenopus embryos leads to ectopic induction of endoderm differentiation in ectoderm, and the induction is achieved via Nodal-dependent and independent manners. In addition, Klf4 overexpression results in anteriorization of body axis, and the anteriorization is even stronger when either Wnt, Nodal, BMP or FGF signaling is blocked, suggesting that it also plays a role in the regulation of body axis patterning. The underlying mechanism is that Klf4 stimulates the transcription of a subset of genes in the Spemann organizer, such as Noggin, Cerberus and Dkk1, which code for antagonists against BMP, Wnt or Nodal. On the other hand, loss of Klf4 function causes failure of germ layer differentiation and defects in body axis formation. Correspondingly, early embryonic cells lose the responsiveness to the activity of inducing signals such as Nodal/Activin, and the genes involved in body axis patterning fail to express [68]. It seems that Klf4 is a competence factor for germ layer differentiation and body axis patterning in Xenopus embryos. Nevertheless, the cross-talks between Klf4 and the signals promoting germ layer differentiation and body axis patterning remain a question for further investigations. A model depicting the function of Klf4 during Xenopus germ layer formation and body axis patterning is shown in Figure 3.

Figure 3
figure 3

A model for the function of Klf4 during Xenopus germ layer formation. Klf4 induces endoderm differentiation via activation of Nodal pathway or directly via activation of endoderm inducing genes, which repress mesodermal gene expression. Klf4 also promotes dorsalization of body axis via stimulation of a subset of genes in the Spemann organizer. When Klf4 activity is blocked, germ layer formation and body axis patterning are also inhibited.


Sox2 is a member of subgroup SoxB1 in the Sox (S RY-related HMG box) family of transcription factors [74]. The sequence and expression are well conserved during evolution. The most prominent feature of Sox2 expression in different animals is the localization of transcription to neuroectoderm during gastrulation, to the neural plates during neurulation and to the central nervous system in later stages of development. Therefore, it has been used as a marker gene for neural differentiation in Xenopus embryos. In mouse, Sox2 mRNA is first present in some cells at morula stages and specifically localizes to the ICM in blastocysts [2], implying that it is involved in the fate decision of early embryonic cells. Sox2-null mouse embryos are lethal at implantation. The embryos show the lack of epiblast but expansion of extraembryonic ectoderm, suggesting that it is essential for epiblast cell identity [2]. However, when both maternal and zygotic Sox2 mRNA is removed using RNAi, mouse embryos arrest at morula stage and trophectoderm cannot form [75]. Both the results above demonstrate that Sox2 is indispensible for early development, and blocking either maternal or zygotic Sox2 generates different effects on the differentiation of early embryonic cells. In Xenopus, there is relatively low abundance of Sox2 maternal transcript, but zygotic transcription increases dramatically since midblastula transition [76], implying that it is involved in the stage of development, when germ layer induction is initiated. It seems to be difficult to detect the spatial distribution of Sox2 transcript in Xenopus embryos earlier than gastrulation using whole mount in situ hybridization [77, 78]. Therefore, much attention has been paid so far to the function of Sox2 in neural development and little care has been taken about its roles in earlier events during Xenopus embryogenesis. In Xenopus, Sox2 alone could not induce neural differentiation, but it serves to render the ectoderm competent to the neuralizing signal FGF [77]. Further analysis demonstrates that Sox2 is required for the maintenance rather than initiation of neural differentiation [79]. The effect of blocking Sox2 activity on germ layer formation has yet not known in Xenopus embryos. During zebrafish embryogenesis, morpholino knockdown of either one of the zebrafish B1 Sox, i.e. Sox1, Sox2, Sox3 or Sox19, generates no effect on embryonic development, probably due to functional redundancy. However, if they are simultaneously knocked down, severe defects occur in embryos [80]. The embryos show not only defect in neural development, but also defect in dorsoventral patterning and gastrulation movements [80]. Thus, the B1 Sox factors should play a role in germ layer formation and patterning. Other studies demonstrate that inhibition of Sox3 function alone in Xenopus or zebrafish embryos already causes malformation of mesendoderm, probably via the regulation of Nodal and Wnt/β-catenin signaling [8184]. Considering that Sox2 and Sox3 are close relatives, it is possible that Sox2 functions similarly to Sox3 [84]. Nevertheless, further evidence is required for confirming such a conjecture.

Other factors

In the above, how the ‘classical’ pluripotency factors regulate early embryonic development is discussed. I would also like to mention in passing the functions of other pluripotency-related factors during early embryogenesis, such as Tcf3, Wdr5, esBAF, Ring1A/B, Zfp296, Nr5a2, Esrrb, etc. [1826]. Tcf3 is a key signal transducer for Wnt/β-catenin signaling pathway, but it is a transcription repressor in absence of Wnt activation. It has been well established that Tcf3 plays an essential role in germ layer formation and dorsoventral (anteroposterior) body axis patterning during early embryonic development of Xenopus and other animals [8588]. Wdr5 and Ring1A/B are involved in the regulation of Hox genes, thereby mediating anteroposterior axis formation, but they seem to have no effect on germ layer formation [89, 90]. So far, there are no records for the functions of esBAF or Zfp296 during early embryogenesis, except for a few reports about their involvement in the pluripotency regulatory network [20, 23, 91, 92]. Esrrb and Nr5a2 are nuclear receptors and have been extensively explored for their functions in differentiation, metabolism and diseases, etc. They are also identified as regulators of pluripotency in recent years and can act as substitutes of Oct4, Klf4 or Nanog in reprogramming or in maintenance of pluripotency [2426, 93]. So far, there are no data about its function in germ layer formation or body axis patterning. In fact, during Xenopus or zebrafish embryogenesis, Nr5a2 (also named Lrh1, Ftz-f1) is not present in early cleavage and gastrula embryos [94, 95]. This expression pattern rules out the possibility of the involvement in the early events of embryonic development, for example, germ layer induction and pattern formation. Similarly, Esrrb (or named ERRβ, errβ) is only detected in zebrafish embryos at 20hpf, when germ layer formation and body axis patterning are completed [96]. There exist two other related genes ERRα and ERRγ. The former is possibly involved in early events of embryogenesis because of its expression from cleavage to gastrula embryos of zebrafish, but the latter is also expressed much later [96]. The temporal expression patterns of these genes during zebrafish embryogenesis are somewhat similar to those in mouse. Inactivation of errβ in mouse results in lethal placental defects [97], but knockout of errα does not affect embryonic development significantly [98]. Therefore, the functions of most of these ‘nonclassical’ pluripotency factors during early embryogenesis remain to be elucidated.

Conclusions and perspectives

Here I summarize the discovery of the functions of the 'classical' pluripotency factors during early embryonic development, especially germ layer formation. These factors, Oct4, Nanog, Klf4 and Sox2, comprise of a regulatory network for the maintenance of pluripotency and self-renewal, and reprogram terminally differentiated cells into a pluripotent state. However, they play different functions during germ layer formation via distinct regulatory mechanisms in Xenopus embryos. Meanwhile Oct4 homologous proteins inhibit the differentiation potential in early embryonic cells, and Klf4 promotes the tendency of differentiation. At the level of molecular mechanisms, the former block the activity of the signals that promote differentiation, while the latter does the opposite, as discussed above. Although it is not clear how Sox2 functions during germ layer differentiation, some hints imply that it might be also a repressor of such an event, because Sox2 can rescue Oct25 morphant in which differentiation is enhanced, while Klf4 can not (personal observation, unpublished data). Functional differences between these pluripotency factors are also manifested in ES cells or iPS cells. Knockout of one of these genes in ES cells leads to differentiation towards different lineages. Oct4 and Sox2 are prerequisite and play the major roles for the iPS, while Klf4 and Nanog play the supporting roles. Such differences are critical for the fine-tuning of signals such that they reach to a balanced state in the cells. During embryogenesis, this means that pluripotency factors like Oct4 serve to regulate the differentiation signals thereby the signals will operate in correct locations and right time, and at the exact levels. Disruption of the balance will lead to the spatiotemporal aberrations of differentiation of early embryonic cells, hence the failure of germ layer formation and body axis patterning. Although the studies as mentioned here have enlightened us of many aspects of the function of pluripotency factors during embryogenesis, however, much more work is required to resolve the discrepancies and get an unbiased understanding of their roles in cell fate decision during germ layer formation and body axis patterning.


BMP signaling pathway: The bone morphogenetic protein signaling pathway. BMP ligands are a subgroup of TGFβ family of secreted growth factors. The signaling is activated upon the binding of the ligand to the type II transmembrane receptor, which subsequently phosporylates type I receptor. Afterwards the receptor I activates receptor-specific Smad transducers (R-Smads), namely Smad1, 5 and 8, by phosphorylation. The activated R-Smad interacts with the co-Smad, Smad4, and the complex translocates into nucleus, where they recruit specific transcription factors to the promoters of target genes and regulate target gene transcription. Studies on Xenopus embryogenesis have demonstrated that BMP signaling pathway plays crucial roles in dorsoventral body axis patterning and neural induction. BMP signaling is responsible for the establishment of ventral structures of Xenopus embryos and neural induction requires inhibition of BMP activity.

Convergent extension movements: a process of cellular rearrangements and migration by which an early embryo is formed into a long and narrow body shape during embryogenesis. During gastrulation, cell intercalation cause the narrowing of one direction (convergence) and the elongation of a perpendicular direction (extension), thus establishing the body plan of an animal. Convergent extension movements also occur during organogenesis to generate an elongated pattern, for example, the gut. Convergent extension movements are well studied in Xenopus embryogenesis, however, it is believed that convergent extension movements are conserved in invertebrates and vertebrates.

Dorsalization: the body plan of an animal embryo is composed of dorsal types of tissues, such as the central nervous system and the notochord, and ventral type of tissues, such as blood, along the dorsoventral axis. The formation of dorsal type of tissues, or dorsalization, and the formation of ventral type of tissues, or ventralization, is the dorsoventral patterning of germ layers during gastrulation.

Epiboly: usually it refers to the movement of ectodermal cells during gastrulation by which ectoderm spreads to cover the whole of the embryo. It is a coordinated process of cell division, shape change and cell intercalation of the ectoderm, which becomes thinner and then wraps the deeper layers of the embryo.

Secondary axis formation: the generation of a second body plan in addition to the primary one in a vertebrate embryo. The secondary axis formation was first demonstrated by Hans Spemann and Hilde Mangold in 1924 in a graft experiment in which they transplanted a small piece of tissue, the dorsal blastopore lip, of one newt (donor) gastrula embryo into the opposite side (ventral side) of the dorsal blastopore lip of another (host) newt gastrula embryo. The grafted dorsal lip was able to ‘organize’ the neighboring cells of the host embryo to form a complete secondary dorsal-ventral and antero-posterior pattern of body axis in addition to the primary body axis, and the graft itself became the notochord. As a result, the host embryo developed a Siamese twin. The Nobel Prize winning (1935) experiment first established the crucial importance of cell-cell inductions during embryonic development. Now it has been recognized via studies in Xenopus embryonic development that the dorsal lip, or called the Spemann-Mangold organizer, is a rich source of secreted factors, such as Noggin, Chordin, Dkk1, Cerberus and so on, that antagonize the activities of the growth factors being emanated from the ventral cells, including BMPs, Wnts and Nodal. Ventral expression of these secreted factors or activation of maternal Wnt pathway can mimic the effect of the dorsal lip graft experiment and induce the formation of secondary axis in the embryos.


  1. 1.

    Niwa H, Miyazaki J, Smith AG: Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells. Nat Genet. 2000, 24 (4): 372-376. 10.1038/74199

    CAS  PubMed  Article  Google Scholar 

  2. 2.

    Avilion AA, Nicolis SK, Pevny LH, Perez L, Vivian N, Lovell-Badge R: Multipotent cell lineages in early mouse development depend on SOX2 function. Genes Dev. 2003, 17 (1): 126-140. 10.1101/gad.224503

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  3. 3.

    Zaehres H, Lensch MW, Daheron L, Stewart SA, Itskovitz-Eldor J, Daley GQ: High-efficiency RNA interference in human embryonic stem cells. Stem Cells. 2005, 23 (3): 299-305. 10.1634/stemcells.2004-0252

    CAS  PubMed  Article  Google Scholar 

  4. 4.

    Nakatake Y, Fukui N, Iwamatsu Y, Masui S, Takahashi K, Yagi R, Yagi K, Miyazaki J, Matoba R, Ko MS, Niwa H: Klf4 cooperates with Oct3/4 and Sox2 to activate the Lefty1 core promoter in embryonic stem cells. Mol Cell Biol. 2006, 26 (20): 7772-7782. 10.1128/MCB.00468-06

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  5. 5.

    Fong H, Hohenstein KA, Donovan PJ: Regulation of self-renewal and pluripotency by Sox2 in human embryonic stem cells. Stem Cells. 2008, 26 (8): 1931-1938. 10.1634/stemcells.2007-1002

    CAS  PubMed  Article  Google Scholar 

  6. 6.

    Darr H, Benvenisty N: Genetic analysis of the role of the reprogramming gene LIN-28 in human embryonic stem cells. Stem Cells. 2009, 27 (2): 352-362. 10.1634/stemcells.2008-0720

    CAS  PubMed  Article  Google Scholar 

  7. 7.

    Takahashi K, Yamanaka S: Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell. 2006, 126 (4): 663-676. 10.1016/j.cell.2006.07.024

    CAS  PubMed  Article  Google Scholar 

  8. 8.

    Wernig M, Meissner A, Foreman R, Brambrink T, Ku M, Hochedlinger K, Bernstein BE, Jaenisch R: In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state. Nature. 2007, 448 (7151): 318-324. 10.1038/nature05944

    CAS  PubMed  Article  Google Scholar 

  9. 9.

    Park IH, Zhao R, West JA, Yabuuchi A, Huo H, Ince TA, Lerou PH, Lensch MW, Daley GQ: Reprogramming of human somatic cells to pluripotency with defined factors. Nature. 2008, 451 (7175): 141-146. 10.1038/nature06534

    CAS  PubMed  Article  Google Scholar 

  10. 10.

    Yu J, Vodyanik MA, Smuga-Otto K, Antosiewicz-Bourget J, Frane JL, Tian S, Nie J, Jonsdottir GA, Ruotti V, Stewart R, Slukvin II, Thomson JA: Induced pluripotent stem cell lines derived from human somatic cells. Science. 2007, 318 (5858): 1917-1920. 10.1126/science.1151526

    CAS  PubMed  Article  Google Scholar 

  11. 11.

    Kim JB, Sebastiano V, Wu G, Araúzo-Bravo MJ, Sasse P, Gentile L, Ko K, Ruau D, Ehrich M, van den Boom D, Meyer J, Hübner K, Bernemann C, Ortmeier C, Zenke M, Fleischmann BK, Zaehres H, Schöler HR: Oct4-induced pluripotency in adult neural stem cells. Cell. 2009, 136 (3): 411-419. 10.1016/j.cell.2009.01.023

    CAS  PubMed  Article  Google Scholar 

  12. 12.

    Kim JB, Greber B, Araúzo-Bravo MJ, Meyer J, Park KI, Zaehres H, Schöler HR: Direct reprogramming of human neural stem cells by OCT4. Nature. 2009, 461 (7264): 649-653. 10.1038/nature08436

    CAS  PubMed  Article  Google Scholar 

  13. 13.

    Hay DC, Sutherland L, Clark J, Burdon T: Oct-4 knockdown induces similar patterns of endoderm and trophoblast differentiation markers in human and mouse embryonic stem cells. Stem Cells. 2004, 22 (2): 225-235. 10.1634/stemcells.22-2-225

    CAS  PubMed  Article  Google Scholar 

  14. 14.

    Li J, Pan G, Cui K, Liu Y, Xu S, Pei D: A dominant-negative form of mouse SOX2 induces trophectoderm differentiation and progressive polyploidy in mouse embryonic stem cells. J Biol Chem. 2007, 282 (27): 19481-19492. 10.1074/jbc.M702056200

    CAS  PubMed  Article  Google Scholar 

  15. 15.

    Bourillot PY, Aksoy I, Schreiber V, Wianny F, Schulz H, Hummel O, Hubner N, Savatier P: Novel STAT3 target genes exert distinct roles in the inhibition of mesoderm and endoderm differentiation in cooperation with Nanog. Stem Cells. 2009, 27 (8): 1760-1771. 10.1002/stem.110

    CAS  PubMed  Article  Google Scholar 

  16. 16.

    Boyer LA, Lee TI, Cole MF, Johnstone SE, Levine SS, Zucker JP, Guenther MG, Kumar RM, Murray HL, Jenner RG, Gifford DK, Melton DA, Jaenisch R, Young RA: Core transcriptional regulatory circuitry in human embryonic stem cells. Cell. 2005, 122 (6): 947-956. 10.1016/j.cell.2005.08.020

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  17. 17.

    Ng HH, Surani MA: The transcriptional and signalling networks of pluripotency. Nat Cell Biol. 2011, 13 (5): 490-496. 10.1038/ncb0511-490

    CAS  PubMed  Article  Google Scholar 

  18. 18.

    Cole MF, Johnstone SE, Newman JJ, Kagey MH, Young RA: Tcf3 is an integral component of the core regulatory circuitry of embryonic stem cells. Genes Dev. 2008, 22 (6): 746-755. 10.1101/gad.1642408

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  19. 19.

    Ang YS, Tsai SY, Lee DF, Monk J, Su J, Ratnakumar K, Ding J, Ge Y, Darr H, Chang B, Wang J, Rendl M, Bernstein E, Schaniel C, Lemischka IR: Wdr5 mediates self-renewal and reprogramming via the embryonic stem cell core transcriptional network. Cell. 2011, 145 (2): 183-197. 10.1016/j.cell.2011.03.003

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  20. 20.

    Ho L, Jothi R, Ronan JL, Cui K, Zhao K, Crabtree GR: An embryonic stem cell chromatin remodeling complex, esBAF, is an essential component of the core pluripotency transcriptional network. Proc Natl Acad Sci USA. 2009, 106 (13): 5187-5191. 10.1073/pnas.0812888106

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  21. 21.

    Endoh M, Endo TA, Endoh T, Fujimura Y, Ohara O, Toyoda T, Otte AP, Okano M, Brockdorff N, Vidal M, Koseki H: Polycomb group proteins Ring1A/B are functionally linked to the core transcriptional regulatory circuitry to maintain ES cell identity. Development. 2008, 135 (8): 1513-1524. 10.1242/dev.014340

    CAS  PubMed  Article  Google Scholar 

  22. 22.

    Kim J, Chu J, Shen X, Wang J, Orkin SH: An extended transcriptional network for pluripotency of embryonic stem cells. Cell. 2008, 132 (6): 1049-1061. 10.1016/j.cell.2008.02.039

    CAS  PubMed  Article  Google Scholar 

  23. 23.

    Fischedick G, Klein DC, Wu G, Esch D, Höing S, Han DW, Reinhardt P, Hergarten K, Tapia N, Schöler HR, Sterneckert JL: Zfp296 is a novel, pluripotent-specific reprogramming factor. PLoS One. 2012, 7 (4): e34645. 10.1371/journal.pone.0034645

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  24. 24.

    Heng JC, Feng B, Han J, Jiang J, Kraus P, Ng JH, Orlov YL, Huss M, Yang L, Lufkin T, Lim B, Ng HH: The nuclear receptor Nr5a2 can replace Oct4 in the reprogramming of murine somatic cells to pluripotent cells. Cell Stem Cell. 2010, 6 (2): 167-174. 10.1016/j.stem.2009.12.009

    CAS  PubMed  Article  Google Scholar 

  25. 25.

    Feng B, Jiang J, Kraus P, Ng JH, Heng JC, Chan YS, Yaw LP, Zhang W, Loh YH, Han J, Vega VB, Cacheux-Rataboul V, Lim B, Lufkin T, Ng HH: Reprogramming of fibroblasts into induced pluripotent stem cells with orphan nuclear receptor Esrrb. Nat Cell Biol. 2009, 11 (2): 197-203. 10.1038/ncb1827

    CAS  PubMed  Article  Google Scholar 

  26. 26.

    Festuccia N, Osorno R, Halbritter F, Karwacki-Neisius V, Navarro P, Colby D, Wong F, Yates A, Tomlinson SR, Chambers I: Esrrb is a direct Nanog target gene that can substitute for Nanog function in pluripotent cells. Cell Stem Cell. 2012, 11 (4): 477-490. 10.1016/j.stem.2012.08.002

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  27. 27.

    Ovitt CE, Scholer HR: The molecular biology of Oct-4 in the early mouse embryo. Mol Hum Reprod. 1998, 4 (11): 1021-1031. 10.1093/molehr/4.11.1021

    CAS  PubMed  Article  Google Scholar 

  28. 28.

    Schöler HR, Dressler GR, Balling R, Rohdewohld H, Gruss P: Oct-4: a germline-specific transcription factor mapping to the mouse t-complex. EMBO J. 1990, 9 (7): 2185-2195.

    PubMed Central  PubMed  Google Scholar 

  29. 29.

    Yeom YI, Fuhrmann G, Ovitt CE, Brehm A, Ohbo K, Gross M, Hubner K, Scholer HR: Germline regulatory element of Oct-4 specific for the totipotent cycle of embryonal cells. Development. 1996, 122 (3): 881-894.

    CAS  PubMed  Google Scholar 

  30. 30.

    Hinkley CS, Martin JF, Leibham D, Perry M: Sequential expression of multiple POU proteins during amphibian early development. Mol Cell Biol. 1992, 12 (2): 638-649.

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  31. 31.

    Whitfield T, Heasman J, Wylie C: XLPOU-60, a Xenopus POU domain mRNA, is oocyte-specific from very early stages of oogenesis, and localised to presumptive mesoderm and ectoderm in the blastula. Dev Biol. 1993, 155 (2): 361-370. 10.1006/dbio.1993.1035

    CAS  PubMed  Article  Google Scholar 

  32. 32.

    Whitfield TT, Heasman J, Wylie CC: Early embryonic expression of XLPOU-60, a Xenopus POU-domain protein. Dev Biol. 1995, 169 (2): 759-769. 10.1006/dbio.1995.1185

    CAS  PubMed  Article  Google Scholar 

  33. 33.

    Morrison GM, Brickman JM: Conserved roles for Oct4 homologues in maintaining multipotency during early vertebrate development. Development. 2006, 133 (10): 2011-2022. 10.1242/dev.02362

    CAS  PubMed  Article  Google Scholar 

  34. 34.

    Cao Y, Knöchel S, Donow C, Miethe J, Kaufmann E, Knöchel W: The POU factor Oct-25 regulates the Xvent-2B gene and counteracts terminal differentiation in Xenopus embryos. J Biol Chem. 2004, 279 (42): 43735-43743. 10.1074/jbc.M407544200

    CAS  PubMed  Article  Google Scholar 

  35. 35.

    Venkatarama T, Lai F, Luo X, Zhou Y, Newman K, King ML: Repression of zygotic gene expression in the Xenopus germline. Development. 2010, 137 (4): 651-660. 10.1242/dev.038554

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  36. 36.

    Cao Y, Siegel D, Knöchel W: Xenopus POU factors of subclass V inhibit activin/nodal signaling during gastrulation. Mech Dev. 2006, 123 (8): 614-625. 10.1016/j.mod.2006.06.004

    CAS  PubMed  Article  Google Scholar 

  37. 37.

    Burgess S, Reim G, Chen W, Hopkins N, Brand M: The zebrafish spiel-ohne-grenzen (spg) gene encodes the POU domain protein Pou2 related to mammalian Oct4 and is essential for formation of the midbrain and hindbrain, and for pre-gastrula morphogenesis. Development. 2002, 129 (4): 905-916.

    CAS  PubMed  Google Scholar 

  38. 38.

    Bachvarova RF, Masi T, Drum M, Parker N, Mason K, Patient R, Johnson AD: Gene expression in the axolotl germ line: Axdazl, Axvh, Axoct-4, and Axkit. Dev Dyn. 2004, 231 (4): 871-880. 10.1002/dvdy.20195

    CAS  PubMed  Article  Google Scholar 

  39. 39.

    Lavial F, Acloque H, Bertocchini F, Macleod DJ, Boast S, Bachelard E, Montillet G, Thenot S, Sang HM, Stern CD, Samarut J, Pain B: The Oct4 homologue PouV and Nanog regulate pluripotency in chicken embryonic stem cells. Development. 2007, 134 (19): 3549-3563. 10.1242/dev.006569

    CAS  PubMed  Article  Google Scholar 

  40. 40.

    Takebayashi-Suzuki K, Arita N, Murasaki E, Suzuki A: The Xenopus POU class V transcription factor XOct-25 inhibits ectodermal competence to respond to bone morphogenetic protein-mediated embryonic induction. Mech Dev. 2007, 124 (11–12): 840-855.

    CAS  PubMed  Article  Google Scholar 

  41. 41.

    Snir M, Ofir R, Elias S, Frank D: Xenopus laevis POU91 protein, an Oct3/4 homologue, regulates competence transitions from mesoderm to neural cell fates. EMBO J. 2006, 25 (15): 3664-3674. 10.1038/sj.emboj.7601238

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  42. 42.

    Cao Y, Siegel D, Donow C, Knöchel S, Yuan L, Knöchel W: POU-V factors antagonize maternal VegT activity and β-Catenin signaling in Xenopus embryos. EMBO J. 2007, 26 (12): 2942-2954. 10.1038/sj.emboj.7601736

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  43. 43.

    Abu-Remaileh M, Gerson A, Farago M, Nathan G, Alkalay I, Zins Rousso S, Gur M, Fainsod A, Bergman Y: Oct-3/4 regulates stem cell identity and cell fate decisions by modulating Wnt/β-catenin signalling. EMBO J. 2010, 29 (19): 3236-3248. 10.1038/emboj.2010.200

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  44. 44.

    Cao Y, Siegel D, Oswald F, Knöchel W: Oct25 represses transcription of nodal/activin target genes by interaction with signal transducers during Xenopus gastrulation. J Biol Chem. 2008, 283 (49): 34168-34177. 10.1074/jbc.M803532200

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  45. 45.

    Julier A, Goll C, Korte B, Knöchel W, Wacker SA: Pou-V factor Oct25 regulates early morphogenesis in Xenopus laevis. Dev Growth Differ. 2012, 54 (7): 702-716. 10.1111/j.1440-169X.2012.01371.x

    CAS  PubMed  Article  Google Scholar 

  46. 46.

    Lunde K, Belting HG, Driever W: Zebrafish pou5f1/pou2 homolog of mammalian Oct4, functions in the endoderm specification cascade. Curr Biol. 2004, 14 (1): 48-55. 10.1016/j.cub.2003.11.022

    CAS  PubMed  Article  Google Scholar 

  47. 47.

    Reim G, Mizoguchi T, Stainier DY, Kikuchi Y, Brand M: The POU domain spg (Pou2/Oct4) is essential for endoderm formation in cooperation with the HMG domain protein casanova. Dev Cell. 2004, 6 (1): 91-101. 10.1016/S1534-5807(03)00396-4

    CAS  PubMed  Article  Google Scholar 

  48. 48.

    Reim G, Brand M: Maternal control of vertebrate dorsoventral axis formation and epiboly by the POU domain protein Spg/Pou2/Oct4. Development. 2006, 133 (14): 2757-2770. 10.1242/dev.02391

    CAS  PubMed  Article  Google Scholar 

  49. 49.

    Khan A, Nakamoto A, Tai M, Saito S, Nakayama Y, Kawamura A, Takeda H, Yamasu K: Mesendoderm specification depends on the function of Pou2, the class V POU-type transcription factor, during zebrafish embryogenesis. Dev Growth Differ. 2012, 54 (7): 686-701. 10.1111/j.1440-169X.2012.01369.x

    CAS  PubMed  Article  Google Scholar 

  50. 50.

    Khan A, Nakamoto A, Okamoto S, Tai M, Nakayama Y, Kobayashi K, Kawamura A, Takeda H, Yamasu K: Pou2, a class V POU-type transcription factor in zebrafish, regulates dorsoventral patterning and convergent extension movement at different blastula stages. Mech Dev. 2012, 129 (9–12): 219-235.

    CAS  PubMed  Article  Google Scholar 

  51. 51.

    Ryan AK, Rosenfeld MG: POU domain family values: flexibility, partnerships, and developmental codes. Genes Dev. 1997, 11 (10): 1207-1225. 10.1101/gad.11.10.1207

    CAS  PubMed  Article  Google Scholar 

  52. 52.

    Cao Y, Oswald F, Wacker SA, Bundschu K, Knöchel W: Reversal of Xenopus Oct25 function by disruption of the POU domain structure. J Biol Chem. 2010, 285 (11): 8408-8421. 10.1074/jbc.M109.064386

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  53. 53.

    Chambers I, Colby D, Robertson M, Nichols J, Lee S, Tweedie S, Smith A: Functional expression cloning of Nanog, a pluripotency sustaining factor in embryonic stem cells. Cell. 2003, 113 (5): 643-655. 10.1016/S0092-8674(03)00392-1

    CAS  PubMed  Article  Google Scholar 

  54. 54.

    Mitsui K, Tokuzawa Y, Itoh H, Segawa K, Murakami M, Takahashi K, Maruyama M, Maeda M, Yamanaka S: The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells. Cell. 2003, 113 (5): 631-642. 10.1016/S0092-8674(03)00393-3

    CAS  PubMed  Article  Google Scholar 

  55. 55.

    Hart AH, Hartley L, Ibrahim M, Robb L: Identification, cloning and expression analysis of the pluripotency promoting Nanog genes in mouse and human. Dev Dyn. 2004, 230 (1): 187-198. 10.1002/dvdy.20034

    CAS  PubMed  Article  Google Scholar 

  56. 56.

    Yamaguchi S, Kimura H, Tada M, Nakatsuji N, Tada T: Nanog expression in mouse germ cell development. Gene Expr Patterns. 2005, 5 (5): 639-646. 10.1016/j.modgep.2005.03.001

    CAS  PubMed  Article  Google Scholar 

  57. 57.

    Schuff M, Siegel D, Philipp M, Bundschu K, Heymann N, Donow C, Knöchel W: Characterization of Danio rerio Nanog and functional comparison to Xenopus Vents. Stem Cells Dev. 2012, 21 (8): 1225-1238. 10.1089/scd.2011.0285

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  58. 58.

    Hellsten U, Harland RM, Gilchrist MJ, Hendrix D, Jurka J, Kapitonov V, Ovcharenko I, Putnam NH, Shu S, Taher L, Blitz IL, Blumberg B, Dichmann DS, Dubchak I, Amaya E, Detter JC, Fletcher R, Gerhard DS, Goodstein D, Graves T, Grigoriev IV, Grimwood J, Kawashima T, Lindquist E, Lucas SM, Mead PE, Mitros T, Ogino H, Ohta Y, Poliakov AV, Pollet N, Robert J, Salamov A, Sater AK, Schmutz J, Terry A, Vize PD, Warren WC, Wells D, Wills A, Wilson RK, Zimmerman LB, Zorn AM, Grainger R, Grammer T, Khokha MK, Richardson PM, Rokhsar DS: The genome of the Western clawed frog Xenopus tropicalis. Science. 2010, 328 (5978): 633-636. 10.1126/science.1183670

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  59. 59.

    Scerbo P, Girardot F, Vivien C, Markov GV, Luxardi G, Demeneix B, Kodjabachian L, Coen L: Ventx factors function as nanog-like guardians of developmental potential in xenopus. PLoS One. 2012, 7 (5): e36855. 10.1371/journal.pone.0036855

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  60. 60.

    Dixon JE, Allegrucci C, Redwood C, Kump K, Bian Y, Chatfield J, Chen YH, Sottile V, Voss SR, Alberio R, Johnson AD: Axolotl Nanog activity in mouse embryonic stem cells demonstrates that ground state pluripotency is conserved from urodele amphibians to mammals. Development. 2010, 137 (18): 2973-2980. 10.1242/dev.049262

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  61. 61.

    Onichtchouk D, Glinka A, Niehrs C: Requirement for Xvent-1 and Xvent-2 gene function in dorsoventral patterning of Xenopus mesoderm. Development. 1998, 125 (8): 1447-1456.

    CAS  PubMed  Google Scholar 

  62. 62.

    Xu C, Fan ZP, Müller P, Fogley R, DiBiase A, Trompouki E, Unternaehrer J, Xiong F, Torregroza I, Evans T, Megason SG, Daley GQ, Schier AF, Young RA, Zon LI: Nanog-like regulates endoderm formation through the Mxtx2-nodal pathway. Dev Cell. 2012, 22 (3): 625-638. 10.1016/j.devcel.2012.01.003

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  63. 63.

    Pearson R, Fleetwood J, Eaton S, Crossley M, Bao S: Krüppel-like transcription factors: a functional family. Int J Biochem Cell Biol. 2008, 40 (10): 1996-2001. 10.1016/j.biocel.2007.07.018

    CAS  PubMed  Article  Google Scholar 

  64. 64.

    McConnell BB, Yang VW: Mammalian Krüppel-like factors in health and diseases. Physiol Rev. 2010, 90 (4): 1337-1381. 10.1152/physrev.00058.2009

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  65. 65.

    Ehlermann J, Pfisterer P, Schorle H: Dynamic expression of Krüppel-like factor 4 (Klf4), a target of transcription factor AP-2alpha during murine mid-embryogenesis. Anat Rec A Discov Mol Cell Evol Biol. 2003, 273 (2): 677-680.

    PubMed  Article  Google Scholar 

  66. 66.

    Hamatani T, Yamada M, Akutsu H, Kuji N, Mochimaru Y, Takano M, Toyoda M, Miyado K, Umezawa A, Yoshimura Y: What can we learn from gene expression profiling of mouse oocytes?. Reproduction. 2008, 135 (5): 581-592. 10.1530/REP-07-0430

    CAS  PubMed  Article  Google Scholar 

  67. 67.

    Wang D, Manali D, Wang T, Bhat N, Hong N, Li Z, Wang L, Yan Y, Liu R, Hong Y: Identification of pluripotency genes in the fish medaka. Int J Biol Sci. 2011, 7 (4): 440-451.

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  68. 68.

    Cao Q, Zhang X, Lu L, Yang L, Gao J, Gao Y, Ma H, Cao Y: Klf4 is required for germ-layer differentiation and body axis patterning during Xenopus embryogenesis. Development. 2012, 139 (21): 3950-3961. 10.1242/dev.082024

    CAS  PubMed  Article  Google Scholar 

  69. 69.

    Segre JA, Bauer C, Fuchs E: Klf4 is a transcription factor required for establishing the barrier function of the skin. Nat Genet. 1999, 22 (4): 356-360. 10.1038/11926

    CAS  PubMed  Article  Google Scholar 

  70. 70.

    Gardiner MR, Daggett DF, Zon LI, Perkins AC: Zebrafish KLF4 is essential for anterior mesendoderm/pre-polster differentiation and hatching. Dev Dyn. 2005, 234 (4): 992-996. 10.1002/dvdy.20571

    CAS  PubMed  Article  Google Scholar 

  71. 71.

    Gardiner MR, Gongora MM, Grimmond SM, Perkins AC: A global role for zebrafish Klf4 in embryonic erythropoiesis. Mech Dev. 2007, 124 (9–10): 762-774.

    CAS  PubMed  Article  Google Scholar 

  72. 72.

    Oates AC, Pratt SJ, Vail B, Yan Y, Ho RK, Johnson SL, Postlethwait JH, Zon LI: The zebrafish Klf gene family. Blood. 2001, 98 (6): 1792-1801. 10.1182/blood.V98.6.1792

    CAS  PubMed  Article  Google Scholar 

  73. 73.

    Huber TL, Perkins AC, Deconinck AE, Chan FY, Mead PE, Zon LI: neptune, a Krüppel-like transcription factor that participates in primitive erythropoiesis in Xenopus. Curr Biol. 2001, 11 (18): 1456-1461. 10.1016/S0960-9822(01)00427-4

    CAS  PubMed  Article  Google Scholar 

  74. 74.

    Kiefer JC: Back to basics: Sox genes. Dev Dyn. 2007, 236 (8): 2356-2366. 10.1002/dvdy.21218

    CAS  PubMed  Article  Google Scholar 

  75. 75.

    Keramari M, Razavi J, Ingman KA, Patsch C, Edenhofer F, Ward CM, Kimber SJ: Sox2 is essential for formation of trophectoderm in the preimplantation embryo. PLoS One. 2010, 5 (11): e13952. 10.1371/journal.pone.0013952

    PubMed Central  PubMed  Article  Google Scholar 

  76. 76.

    Bowes JB, Snyder KA, Segerdell E, Jarabek CJ, Azam K, Zorn AM, Vize PD: Xenbase: gene expression and improved integration. Nucleic Acids Res. 2009, 10.1093/nar/gkp953.

    Google Scholar 

  77. 77.

    Mizuseki K, Kishi M, Matsui M, Nakanishi S, Sasai Y: Xenopus Zic-related-1 and Sox-2, two factors induced by chordin, have distinct activities in the initiation of neural induction. Development. 1998, 125 (4): 579-87.

    CAS  PubMed  Google Scholar 

  78. 78.

    Nitta KR, Takahashi S, Haramoto Y, Fukuda M, Onuma Y, Asashima M: Expression of Sox1 during Xenopus early embryogenesis. Biochem Biophys Res Commun. 2006, 351 (1): 287-93. 10.1016/j.bbrc.2006.10.040

    CAS  PubMed  Article  Google Scholar 

  79. 79.

    Kishi M, Mizuseki K, Sasai N, Yamazaki H, Shiota K, Nakanishi S, Sasai Y: Requirement of Sox2-mediated signaling for differentiation of early Xenopus neuroectoderm. Development. 2000, 127 (4): 791-800.

    CAS  PubMed  Google Scholar 

  80. 80.

    Okuda Y, Ogura E, Kondoh H, Kamachi Y: B1 SOX coordinate cell specification with patterning and morphogenesis in the early zebrafish embryo. PLoS Genet. 2010, 6 (5): e1000936. 10.1371/journal.pgen.1000936

    PubMed Central  PubMed  Article  Google Scholar 

  81. 81.

    Zorn AM, Barish GD, Williams BO, Lavender P, Klymkowsky MW, Varmus HE: Regulation of Wnt signaling by Sox proteins: XSox17α and XSox3 physically interact with β-catenin. Mol Cell. 1999, 4 (4): 487-498. 10.1016/S1097-2765(00)80200-2

    CAS  PubMed  Article  Google Scholar 

  82. 82.

    Zhang C, Basta T, Jensen ED, Klymkowsky MW: The β-catenin/VegT-regulated early zygotic gene Xnr5 is a direct target of SOX3 regulation in Xenopus. Development. 2003, 130 (23): 5609-5624. 10.1242/dev.00798

    CAS  PubMed  Article  Google Scholar 

  83. 83.

    Zhang C, Basta T, Hernandez-Lagunas L, Simpson P, Stemple DL, Artinger KB, Klymkowsky MW: Repression of nodal expression by maternal B1-type SOXs regulates germ layer formation in Xenopus and zebrafish. Dev Biol. 2004, 273 (1): 23-37. 10.1016/j.ydbio.2004.05.019

    CAS  PubMed  Article  Google Scholar 

  84. 84.

    Kormish JD, Sinner D, Zorn AM: Interactions between SOX factors and Wnt/beta-catenin signaling in development and disease. Dev Dyn. 2010, 239 (1): 56-68.

    PubMed Central  CAS  PubMed  Google Scholar 

  85. 85.

    Molenaar M, van de Wetering M, Oosterwegel M, Peterson-Maduro J, Godsave S, Korinek V, Roose J, Destrée O, Clevers H: XTcf-3 transcription factor mediates beta-catenin-induced axis formation in Xenopus embryos. Cell. 1996, 86 (3): 391-399. 10.1016/S0092-8674(00)80112-9

    CAS  PubMed  Article  Google Scholar 

  86. 86.

    Kim CH, Oda T, Itoh M, Jiang D, Artinger KB, Chandrasekharappa SC, Driever W, Chitnis AB: Repressor activity of Headless/Tcf3 is essential for vertebrate head formation. Nature. 2000, 407 (6806): 913-916. 10.1038/35038097

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  87. 87.

    Merrill BJ, Pasolli HA, Polak L, Rendl M, García-García MJ, Anderson KV, Fuchs E: Tcf3: a transcriptional regulator of axis induction in the early embryo. Development. 2004, 131 (2): 263-274.

    CAS  PubMed  Article  Google Scholar 

  88. 88.

    Liu F, van den Broek O, Destrée O, Hoppler S: Distinct roles for Xenopus Tcf/Lef genes in mediating specific responses to Wnt/beta-catenin signalling in mesoderm development. Development. 2005, 132 (24): 5375-5385. 10.1242/dev.02152

    CAS  PubMed  Article  Google Scholar 

  89. 89.

    Suzuki M, Mizutani-Koseki Y, Fujimura Y, Miyagishima H, Kaneko T, Takada Y, Akasaka T, Tanzawa H, Takihara Y, Nakano M, Masumoto H, Vidal M, Isono K, Koseki H: Involvement of the Polycomb-group gene Ring1B in the specification of the anterior-posterior axis in mice. Development. 2002, 129 (18): 4171-4183.

    CAS  PubMed  Google Scholar 

  90. 90.

    Wysocka J, Swigut T, Milne TA, Dou Y, Zhang X, Burlingame AL, Roeder RG, Brivanlou AH, Allis CD: WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development. Cell. 2005, 121 (6): 859-872. 10.1016/j.cell.2005.03.036

    CAS  PubMed  Article  Google Scholar 

  91. 91.

    Ho L, Miller EL, Ronan JL, Ho WQ, Jothi R, Crabtree GR: esBAF facilitates pluripotency by conditioning the genome for LIF/STAT3 signalling and by regulating polycomb function. Nat Cell Biol. 2011, 13 (8): 903-913. 10.1038/ncb2285

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  92. 92.

    Novershtern N, Hanna JH: esBAF safeguards Stat3 binding to maintain pluripotency. Nat Cell Biol. 2011, 13 (8): 886-888. 10.1038/ncb2311

    CAS  PubMed  Article  Google Scholar 

  93. 93.

    Heng JC, Orlov YL, Ng HH: Transcription factors for the modulation of pluripotency and reprogramming. Cold Spring Harb Symp Quant Biol. 2010, 75: 237-244. 10.1101/sqb.2010.75.003

    CAS  PubMed  Article  Google Scholar 

  94. 94.

    Ellinger-Ziegelbauer H, Hihi AK, Laudet V, Keller H, Wahli W, Dreyer C: FTZ-F1-related orphan receptors in Xenopus laevis: transcriptional regulators differentially expressed during early embryogenesis. Mol Cell Biol. 1994, 14 (4): 2786-2797. 10.1128/MCB.14.4.2786

    PubMed Central  CAS  PubMed  Article  Google Scholar 

  95. 95.

    Sheela SG, Lee WC, Lin WW, Chung BC: Zebrafish ftz-f1a (nuclear receptor 5a2) functions in skeletal muscle organization. Dev Biol. 2005, 286 (2): 377-390. 10.1016/j.ydbio.2005.06.023

    CAS  PubMed  Article  Google Scholar 

  96. 96.

    Bardet PL, Obrecht-Pflumio S, Thisse C, Laudet V, Thisse B, Vanacker JM: Cloning and developmental expression of five estrogen-receptor related genes in the zebrafish. Dev Genes Evol. 2004, 214 (5): 240-249. 10.1007/s00427-004-0404-6

    CAS  PubMed  Article  Google Scholar 

  97. 97.

    Luo J, Sladek R, Bader JA, Matthyssen A, Rossant J, Giguere V: Placental abnormalities in mouse embryos lacking the orphan nuclear receptor ERR-beta. Nature. 1997, 388: 778-782. 10.1038/42022

    CAS  PubMed  Article  Google Scholar 

  98. 98.

    Luo J, Sladek R, Carrier J, Bader JA, Richard D, Gigure V: Reduced fat mass in mice lacking orphan nuclear receptor Estrogen-Related Receptor α. Mol Cell Biol. 2003, 23: 7947-7956. 10.1128/MCB.23.22.7947-7956.2003

    PubMed Central  CAS  PubMed  Article  Google Scholar 

Download references


This work was supported by the Ministry of Science and Technology of China (2011CB943804, 2010CB945101), and the National Science Foundation of China (30871399, 30971649).

Author information



Corresponding author

Correspondence to Ying Cao.

Additional information

Competing interests

The author declares that he has no competing interests.

Authors’ original submitted files for images

Below are the links to the authors’ original submitted files for images.

Authors’ original file for figure 1

Authors’ original file for figure 2

Authors’ original file for figure 3

Rights and permissions

This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Reprints and Permissions

About this article

Cite this article

Cao, Y. Regulation of germ layer formation by pluripotency factors during embryogenesis. Cell Biosci 3, 15 (2013).

Download citation

  • Received:

  • Accepted:

  • Published:

  • DOI:


  • Pluripotency factors
  • Early embryogenesis
  • Germ layers
  • Cell fate decision
  • Xenopus