- Open Access
Correction to: Hepatitis, testicular degeneration, and ataxia in DIDO3-deficient mice with altered mRNA processing
Cell & Bioscience volume 12, Article number: 144 (2022)
Correction to: Cell & Bioscience (2022) 12:84 https://doi.org/10.1186/s13578-022-00804-8
After publication of the original article , we realized that two files in the Supplementary Information, Additional files 4 and 7, were incorrect. The correct Additional files 4 and 7 are available on Cell & Bioscience’s website from the date of publication of this note.
In addition, a part of the Methods section was missing in the original article. Methods for Additional file 4 are as follows:
Burrows-Wheeler aligner BWA-MEM 0.7.15 (RRID:SCR_010910) was used to align paired-end reads to the UCSC mouse genome build mm10 with standard settings. Alignments were converted to BAM format and de-duplicated with Picard tools 2.9.0 (RRID:SCR_006525). To quantify relative expression of transcripts, we ran StringTie 1.3.3 (RRID:SCR_016323)  and calculated the transcripts per million (TPM) reads. Sample scaling and statistical analyses were performed with the R package edgeR (RRID:SCR_012802) . Transcripts with TPM > 0 in all samples were kept for downstream analysis. Differentially expressed genes with an absolute value of log2 fold change ≥ 1 and a false-discovery rate (FDR) < 0.05 were considered statistically significant.
Gutiérrez J, van Wely KHM, Martínez-A C. Hepatitis, testicular degeneration, and ataxia in DIDO3-deficient mice with altered mRNA processing. Cell Biosci. 2022;12:84.
Pertea M, Pertea GM, Antonescu CM, Chang TC, Mendell JT, Salzberg SL. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads. Nat Biotechnol. 2015;33:290–5.
Robinson MD, McCarthy DJ, Smyth GK. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics. 2010;26:139–40.
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
About this article
Cite this article
Gutiérrez, J., van Wely, K.H.M. & Martínez-A, C. Correction to: Hepatitis, testicular degeneration, and ataxia in DIDO3-deficient mice with altered mRNA processing. Cell Biosci 12, 144 (2022). https://doi.org/10.1186/s13578-022-00843-1