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Table 1 Common genetic mutations identified between LYSZa3 and LYSZa6

From: Pseudomonas aeruginosa modulates alginate biosynthesis and type VI secretion system in two critically ill COVID-19 patients

  LYSZa3 vs LYSZa2 LYSZa6 vs LYSZa5
Gene Product Type Amino acid change Coding region change in longest transcript Non-synonymous Type Amino acid change Coding region change in longest transcript Non-synonymous
PA0041 Hemagglutinin SNV   5803C > T No SNV   5803C > T No
PA0259 Type 6 lipase adaptor, Tla3 SNV   333A > G No SNV   333A > G No
MNV   330_331delinsTT No MNV   330_331delinsTT No
SNV   327 T > G No SNV   327 T > G No
SNV   324 T > A No SNV   324 T > A No
MNV Ser107Asn 320_321delinsAT Yes MNV Ser107Asn 320_321delinsAT Yes
SNV   315 T > C No SNV   315 T > C No
SNV Asp105Asn 313G > A Yes SNV Asp105Asn 313G > A Yes
SNV   303G > A No SNV   303G > A No
fiuA Ferrichrome receptor FiuA SNV   1854C > T No SNV   1854C > T No
SNV   1842G > C No SNV   1842G > C No
SNV   1830G > C No SNV   1830G > C No
SNV Ile608Met 1824C > G Yes SNV Ile608Met 1824C > G Yes
SNV Ile608Leu 1822A > C Yes SNV Ile608Leu 1822A > C Yes
SNV   1812G > A No SNV   1812G > A No
SNV   1800G > C No SNV   1800G > C No
SNV   1797G > A No SNV   1797G > A No
SNV   1794G > C No SNV   1794G > C No
SNV   1792C > T No SNV   1792C > T No
Deletion Ser597fs 1790delC Yes Deletion Ser597fs 1790delC Yes
SNV Ser596Arg 1788 T > A Yes SNV Ser596Arg 1788 T > A Yes
Insertion Ser596fs 1786dupA Yes Insertion Ser596fs 1786dupA Yes
SNV Thr595Asn 1784C > A Yes SNV Thr595Asn 1784C > A Yes
MNV   1780_1781delinsTC No MNV   1780_1781delinsTC No
Insertion Asn593fs 1778_1779insGG Yes Insertion Asn593fs 1778_1779insGG Yes
MNV Met592_Asn593delinsIleTyr 1776_1777delinsAT Yes MNV Met592_Asn593delinsIleTyr 1776_1777delinsAT Yes
Replacement Met592fs 1773delinsCG Yes Replacement Met592fs 1773delinsCG Yes
PA4514 Iron transport outer membrane receptor SNV Thr193Ile 578C > T Yes SNV Thr193Ile 578C > T Yes
Replacement Asp190fs 569_570delinsG Yes Replacement Asp190fs 569_570delinsG Yes
SNV Gln189Leu 566A > T Yes SNV Gln189Leu 566A > T Yes
Insertion Gln189fs 564dupG Yes Insertion Gln189fs 564dupG Yes
PA5088 Type VI secretion lipase immunity protein, Tli5b3 SNV Gly181Ser 541G > A Yes SNV Gly181Ser 541G > A Yes
SNV   528G > C No SNV   528G > C No
  1. Full list of genetic mutations is included in Additional file 7: Table S5