Table 1 Top 15 up and down regulated lncRNA and target mRNA
From: Long noncoding RNA TANCR promotes γδ T cells activation by regulating TRAIL expression in cis
LncRNA ID | LncRNA location | Target mRNA | Control FPKM | Exp FPKM | FC | Up/down | p value |
|---|---|---|---|---|---|---|---|
NONHSAT121988.2 | cis_mRNA_overlap | NM_001145306 | 0.01 | 7.28 | 728 | Up | 3.77E‒70 |
NONHSAT137540.2 | cis_mRNA_overlap | NR_003255 | 0.02 | 5.32 | 266 | Up | 1.23E‒294 |
NONHSAT152541.1 | cis_mRNA_overlap | NM_003762 | 0.01 | 2.06 | 206 | Up | 6.51E‒18 |
NONHSAT137555.2 | cis_mRNA_overlap | NR_003255 | 0.02 | 3.96 | 198 | Up | 4.72E‒99 |
NONHSAT182712.1 | cis_mRNA_overlap | NM_014607 | 0.02 | 3.52 | 176 | Up | 9.26E‒26 |
NONHSAT114689.2 | cis_mRNA_overlap | NM_001029858 | 0.86 | 137.81 | 160 | Up | 3.85E‒131 |
NONHSAT056185.2 | cis_mRNA_dw20k | NM_001127198 | 0.04 | 5.72 | 143 | Up | 2.16E‒71 |
NONHSAT207077.1 | cis_mRNA_overlap | NM_014046 | 0.12 | 15.01 | 125 | Up | 8.60E‒17 |
NONHSAT071221.2 | cis_mRNA_overlap | NR_130931 | 0.14 | 12.9 | 92 | Up | 1.93E‒76 |
NONHSAT093397.2 | cis_mRNA_dw20k | NM_033540 | 0.01 | 0.88 | 88 | Up | 0.0321706 |
NONHSAT172882.1 | cis_mRNA_dw20k | NM_013258 | 0.33 | 28.68 | 87 | Up | 4.75E‒105 |
NONHSAT148955.1 | cis_mRNA_overlap | NM_024646 | 0.01 | 0.83 | 83 | Up | 0.00683706 |
NONHSAT119974.2 | cis_mRNA_overlap | NR_036501 | 0.01 | 0.74 | 74 | Up | 2.34E‒05 |
NONHSAT138724.2 | cis_mRNA_overlap | NR_038461 | 0.09 | 6.45 | 72 | Up | 5.57E‒13 |
NONHSAT026084.2 | cis_mRNA_dw20k | NM_001297438 | 0.02 | 1.37 | 68.5 | Up | 0.0001099758 |
NONHSAT103660.2 | cis_mRNA_overlap | NM_001046 | 13.12 | 0.05 | 262.4 | Down | 0.001397956 |
NONHSAT176182.1 | cis_mRNA_overlap | NM_000964 | 2.55 | 0.01 | 255 | Down | 2.58E‒08 |
NONHSAT179933.1 | cis_mRNA_overlap | NM_001317113 | 31.62 | 0.13 | 243 | Down | 1.94E‒169 |
NONHSAT151799.1 | cis_mRNA_overlap | NM_201624 | 4.11 | 0.02 | 205.5 | Down | 8.82E‒18 |
NONHSAT069808.2 | cis_mRNA_overlap | NM_001329113 | 4.09 | 0.17 | 204.5 | Down | 2.11E‒30 |
NONHSAT041504.2 | cis_mRNA_up10k | NR_036650 | 6.44 | 0.04 | 161 | Down | 0.000227306 |
NONHSAT096695.2 | cis_mRNA_overlap | NR_015439 | 1.6 | 0.01 | 160 | Down | 5.78E‒19 |
NONHSAT176679.1 | cis_mRNA_dw20k | NM_001316321 | 2.82 | 0.02 | 141 | Down | 1.04E‒08 |
NONHSAT119667.2 | cis_mRNA_overlap | NR_038367 | 1.3 | 0.01 | 130 | Down | 9.17E‒05 |
NONHSAT097487.2 | cis_mRNA_overlap | NM_001100426 | 1.29 | 0.01 | 129 | Down | 9.17E‒05 |
NONHSAT069824.2 | cis_mRNA_overlap | NM_005253 | 236.63 | 1.96 | 121 | Down | 3.83E‒57 |
NONHSAT000029.2 | cis_mRNA_overlap | NR_039983 | 2.34 | 0.02 | 117 | Down | 6.46E‒37 |
NONHSAT082319.2 | cis_mRNA_dw20k | NM_004915 | 3.43 | 0.03 | 114 | Down | 8.57E‒27 |
NONHSAT141480.2 | cis_mRNA_overlap | NM_001024401 | 4.46 | 0.04 | 111.5 | Down | 5.45E‒42 |
NONHSAT185717.1 | cis_mRNA_dw20k | NR_147695 | 88 | 0.83 | 106 | Down | 4.41E‒156 |