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Table 1 The top 10 significant down- and up-regulated genes associated with lymph node metastasis or TNM stages

From: Transcriptome analysis reveals an important candidate gene involved in both nodal metastasis and prognosis in lung adenocarcinoma

  Genes logFC logCPM p value FDR
Lymph node metastasis      
 Down-regulated 7SK − 6.38529 5.376253 1.92E−54 1.62E−50
SNORA73B − 4.89863 3.941633 2.30E−47 1.29E−43
SNORD17 − 4.59669 2.395325 2.50E−44 1.20E−40
SCARNA6 − 4.33589 − 0.05263 1.57E−42 5.85E−39
SCARNA5 − 6.21022 2.186735 1.80E−42 6.05E−39
SCARNA10 − 5.72043 1.274605 4.91E−41 1.45E−37
MSTN − 4.5735 1.589033 3.65E−39 9.44E−36
SCARNA7 − 3.88216 − 0.07935 7.12E−37 1.68E−33
SCARNA13 − 3.0861 0.701175 3.84E−36 7.73E−33
RNU4-1 − 6.06981 1.417159 3.91E−36 7.73E−33
 Up-regulated NNAT 3.773884 2.325209 2.37E−89 7.97E−85
LRRC38 5.827189 1.230182 1.32E−68 2.23E−64
VSX2 4.728637 − 1.57565 1.85E−55 2.07E−51
AC087257.2 3.860068 − 2.07862 1.84E−52 1.24E−48
LINC01433 3.163173 − 2.46671 3.82E−43 1.61E−39
FAM205C 3.293196 − 2.91757 7.49E−37 1.68E−33
AL161668.1 4.428092 − 3.68113 1.56E−35 2.77E−32
RTP1 3.811513 − 2.18471 1.65E−34 2.64E−31
GSG1L2 4.357816 − 3.36664 1.11E−31 1.44E−28
CALB1 3.446571 3.71567 4.30E−31 5.16E−28
TNM stages      
 Down-regulated 7SK − 6.062979794 5.353737093 6.74E−31 6.13E−28
SNORA73B − 4.647298488 3.923197774 1.76E−27 1.26E−24
SNORD17 − 4.325760083 2.373029662 1.51E−25 9.39E−23
SCARNA5 − 5.981744956 2.167025263 5.95E−25 3.63E−22
SCARNA6 − 4.052245334 − 0.070346602 2.75E−24 1.62E−21
SCARNA10 − 5.377554867 1.251887603 1.35E−23 7.42E−21
MSTN − 4.340706495 1.520356478 1.70E−23 8.96E−21
SCARNA7 − 3.7237236 − 0.10084326 2.81E−22 1.26E−19
RNU4-1 − 5.712216563 1.396659528 6.97E−21 2.79E−18
RNU4-2 − 5.357340472 2.502793386 1.26E−20 4.94E−18
 Up-regulated PPIAP46 4.012250624 − 0.902056299 1.92E−100 6.46E−96
HNRNPA1P52 3.896195799 − 1.852379148 4.95E−96 8.32E−92
LRRC38 6.291094962 1.168289657 3.92E−92 4.39E−88
AC087257.2 4.527651209 − 2.097876396 1.53E−81 1.28E−77
VSX2 5.232030072 − 1.594431836 1.90E−76 1.28E−72
PSG11 7.901940389 − 1.563148972 2.93E−58 1.64E−54
FAM205C 3.883821429 − 2.930755861 6.97E−55 3.35E−51
FXNP2 3.718917178 − 3.212051642 1.45E−53 6.09E−50
MARCH4 2.823672408 0.803655353 1.61E−45 6.02E−42
RTP1 4.254620305 − 2.219012962 5.41E−45 1.82E−41