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Table 1 PCR-RFLP protocol for the genotyping of MBL2 additional 5′ variants, PCR primers and conditions

From: Impact of SNPs interplay across the locus of MBL2, between MBL and Dectin-1 gene, on women’s risk of developing recurrent vulvovaginal infections

MBL2 SNPs

Primer type

Primer sequence

Working primer conc. (p mol/µl)

PCR Conditions for all reactions

Product size (bp)

rs11003124a

Forward

5′-GCTGGCTTATGCCTGTTAGC-3′

0.05

95 °C for 5 min, followed by 35 cycles (94 °C for 30 s, 53 °C for 30 s, and 72 °C for 45 s) and a final elongation at 72 °C for 5 min

524

Reverse

5′-CTGCTGAGGTTTCTTAGGGGG-3′

0.05

rs7084554a

Forward

5′-AAGGAGGGGTTCATCTGTGC-3′

0.15

551

Reverse

5′-TGGGAGGAGGATTCAAGGCA-3′

0.15

rs36014597b

Forward

5′-TCCTGCCAGAAAGTAGAGAGGT-3′

0.15

585

Reverse

5′-TGGCCTCTAGCTGGGGATTT-3′

0.15

rs11003123a

Forward

5′-CTGGTTCCCCCTTTTCTCCC-3′

0.10

506

Reverse

5′-TGCACGGTCCCATTTGTTCT-3′

0.10

  1. aDenote SNPs reported at forward strand
  2. bDenote SNPs reported at Reverse strand