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Table 3 The data filtering statistics of RNA-Seq data from NSCLC and control EVs

From: Characterization and selective incorporation of small non-coding RNAs in non-small cell lung cancer extracellular vesicles

Type ADC SQCC CTRL
Count Percent (%) Count Percent (%) Count Percent (%)
Total reads 41,609,790 100 36,662,475 100 45,042,122 100
3′adapter NULL 796,544 1.91 736,542 2.01 923,352 2.05
Insert NULL 406,921 0.98 97,794 0.27 4,748,412 10.54
5′adapter contaminants 23,913 0.06 10,567 0.03 178,076 0.40
Removed inferior quality 202,479 0.49 169,470 0.46 268,256 0.60
Smaller than 17 nt 1,482,425 3.56 1,033,392 2.82 1,843,389 4.09
Poly-A/T/C/G/N 6266 0.02 6794 0.02 39,603 0.09
Clean reads 38,691,242 92.99 34,607,916 94.40 37,041,034 82.24
  1. The RNA-Seq filtering data of plasma EVs are shown above as a count and percentage
  2. ADC adenocarcinoma, SQCC squamous cell carcinoma, CTRL healthy controls