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Table 1 RNA-seq sequence reads mapping to UCSC Human genome build 19 by TopHat v1.3.0/Bowtie v0.12.7

From: RNA-seq analysis of synovial fibroblasts brings new insights into rheumatoid arthritis

  WT   RA  
  1 2 Average 1 2 Average
Total reads 80,782,262 82,738,536 81,760,399 89,757,726 83,430,548 86,594,137
Reads removed 0.10% 0.12% 0.11% 0.15% 0.12% 0.13%
Read aligned toreference genome 82.8% 84.6% 83.7% 89.1% 87.6% 88.4%
  1. Total reads and the percentage of those reads removed due to low quality and aligned to hg19 by TopHat. TopHat allows two mismatches when aligning to a reference genome.