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Table 4 CDSs related to chemotaxis in L. hongkongensis genome

From: Transport genes and chemotaxis in Laribacter hongkongensis: a genome-wide analysis

CDS Gene Product Organism with the closest matching sequences E-value Identities Clustera
LHK_00115   histidine kinase, HAMP region: chemotaxis sensory transducer D. aromatica 1e-96 242/680 (35%)  
LHK_00482   methyl-accepting chemotaxis sensory transducer L. nitroferrum 4e-55 164/543(30%)  
LHK_00516   methyl-accepting chemotaxis sensory transducer L. nitroferrum 8e-129 265/513 (51%)  
LHK_00553   diguanylate phosphodiesterase C. violaceum 6e-111 211/406 (51%) CA
LHK_00554 cheA1 CheA signal transduction histidine kinase L. nitroferrum 0 443/613 (72%) CA
LHK_00555 cheZ1 chemotaxis phosphatase, CheZ L. nitroferrum 2e-69 139/244(59%) CA
LHK_00556 cheY1 chemotaxis regulator protein CheY C. violaceum 4e-61 109/130 (83%) CA
LHK_00557 cheV1 chemotaxis protein CheV C. violaceum 1e-138 240/314 (76%) CA
LHK_00558 cheV2 chemotaxis protein CheV C. violaceum 5e-147 251/313 (80%) CA
LHK_00559   two-component sensor histidine kinase L. nitroferrum 2e-59 169/381 (44%) CA
LHK_00560   chemotaxis sensory transducer D. aromatica 6e-24 100/320 (31%) CA
LHK_00561 cheY2 chemotaxis protein cheY D. aromatica 8e-46 85/121 (70%) CA
LHK_00562 cheA2 chemotaxis protein CheA C. violaceum 2e-161 358/746 (47%) CA
LHK_00563 cheW CheW protein Burkholderia phytofirmans 1e-40 95/153 (62%) CA
LHK_00564   methyl-accepting chemotaxis protein C. violaceum 4e-143 315/475 (66%) CA
LHK_00565 cheR CheR chemotaxis protein methyltransferase Janthinobacterium sp. Marseille 5e-68 125/273 (45%) CA
LHK_00566 cheB1 chemotaxis-specific methylesterase Nitrosomonas europaea 2e-99 186/355 (52%) CA
LHK_00567 cheD chemoreceptor glutamine deamidase CheD D. aromatica 5e-59 108/189 (57%) CA
LHK_00603   methyl-accepting chemotaxis protein C. violaceum 7e-103 242/624 (38%)  
LHK_00617   methyl-accepting chemotaxis protein IV C. violaceum 2e-100 223/481 (46%)  
LHK_00700   methyl-accepting chemotaxis sensory transducer Allochromatium vinosum 0 384/715 (53%)  
LHK_00726 aer1 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor L. nitroferrum 7e-114 232/528 (43%)  
LHK_00935 cheR MCP methyltransferase, CheR-type L. nitroferrum 2e-92 170/282 (60%)  
LHK_01020   putative aromatic hydrocarbon chemotaxis transducer Azoarcus sp. 4e-62 140/338 (41%)  
LHK_01116   methyl-accepting chemotaxis protein Denitrovibrio acetiphilus 1e-59 152/461 (32%)  
LHK_01212   methyl-accepting chemotaxis sensory transducer L. nitroferrum 1e-135 261/476 (54%)  
LHK_01359 cheY3 chemotaxis regulator protein CheY C. violaceum 1e-56 102/127 (80%) CB
LHK_01360 cheV3 chemotaxis protein CheV C. violaceum 1e-134 231/309 (74%) CB
LHK_01361   methyl-accepting chemotaxis sensory transducer L. nitroferrum 6e-47 157/506 (31%) CB
LHK_01372   chemotaxis sensory transducer D. aromatica 4e-49 166/534 (31%)  
LHK_01470   putative aromatic hydrocarbon chemotaxis transducer Azoarcus sp. 2e-93 222/539 (41%)  
LHK_01602   methyl-accepting chemotaxis sensory transducer L. nitroferrum 0 339/601 (56%)  
LHK_01618   methyl-accepting chemotaxis sensory transducer L. nitroferrum 2e-87 209/525 (39%)  
LHK_01706   methyl-accepting chemotaxis protein IV C. violaceum 1e-121 247/481 (51%)  
LHK_01721   methyl-accepting chemotaxis protein C. violaceum 4e-113 240/627 (38%)  
LHK_02037   methyl-accepting chemotaxis sensory transducer Leptospirillum ferrodiazotrophum 5e-63 137/327 (41%)  
LHK_02158 aer2 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor Ralstonia pickettii 6e-39 98/276 (35%)  
LHK_02165   methyl-accepting chemotaxis protein C. violaceum 8e-146 275/631 (43%)  
LHK_02364 cheB2 response regulator receiver modulated CheB methylesterase Geobacter bemidjiensis 1e-63 122/206 (59%)  
LHK_02427   methyl-accepting chemotaxis protein C. violaceum 6e-110 227/629 (36%) CC
LHK_02428   Hypothetical protein No    CC
LHK_02429 cheV4 response regulator receiver modulated CheW protein L. nitroferrum 2e-145 248/313 (79%) CC
LHK_02430 cheV5 chemotaxis protein CheV C. violaceum 3e-137 237/314 (75%) CC
LHK_02431 cheY4 chemotaxis regulator protein CheY C. violaceum 2e-58 105/127 (82%) CC
LHK_02432 cheZ2 chemotaxis phosphatase, CheZ L. nitroferrum 2e-63 129/248 (52%) CC
LHK_02433 cheA3 CheA signal transduction histidine kinase L. nitroferrum 0 420/611 (68%) CC
LHK_02455   methyl-accepting chemotaxis sensory transducer Candidatus Accumulibacter phosphates 1e-74 154/326 (47%)  
LHK_02575   putative Methyl-accepting or sensory transducer chemotaxis protein Alteromonadales bacterium 1e-83 172/407 (42%)  
LHK_02814 aer3 chemotaxis sensory transducer Rhodopseudomonas palustris 8e-42 138/425 (32%)  
LHK_02834   methyl-accepting chemotaxis protein Pseudomonas syringae 1e-45 148/437 (33%)  
LHK_03026   methyl-accepting chemotaxis protein C. violaceum 6e-145 275/627 (43%)  
LHK_03119   methyl-accepting chemotaxis sensory transducer L. nitroferrum 2e-133 273/514 (53%)  
LHK_03163   methyl-accepting chemotaxis sensory transducer Candidatus Accumulibacter phosphatis 9e-50 167/494 (33%)  
  1. aThe Che proteins were encoded in three gene clusters, named CA, CB and CC (chemotaxis A, B and C clusters)