Fig. 2

scMTD improves gene expression structures validated by FISH experiments in the Torre dataset. a Scatter plot shows 19 overlapped genes’ Gini coefficients of the (raw and imputed) scRNA-seq data vs. the FISH data, respectively. b The root mean square error (RMSE) of genes’ Gini coefficients between the (raw and imputed) scRNA-seq data and FISH data. c The correlation matrix distance (CMD) of genes between the (raw and imputed) scRNA-seq data and FISH data, and the correlation matrix was measured by Pearson’s correlation coefficient. d Density plot shows the expression distributions of KDM5B and RUNX2 in the raw data, scMTD imputed data, and FISH data, respectively