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Table 2 Summary and identification of the down-regulated genes associated with phytohormone pathways in response to TSA treatment

From: Transcriptomic analysis reveals the key role of histone deacetylation via mediating different phytohormone signalings in fiber initiation of cotton

Gene ID

Gene name

Annotation

Regulated type

Fold change (Log2)

Associated pathway

Gh_A10G1020

GhIAA3_A10

INDOLE-3-ACETIC ACID INDUCIBLE 3

Down

− 2.0372

Auxin

Gh_D02G0405

GhIAA4_D02

INDOLE-3-ACETIC ACID INDUCIBLE 4

Down

− 2.2086

Auxin

Gh_A09G1945

GhIAA4_A09

Down

− 2.7903

Auxin

Gh_A02G0340

GhIAA4_A02

Down

− 1.5551

Auxin

Gossypium_hirsutum

_newGene_23351

GhIAA4_N

Down

− 1.0348

Auxin

Gh_D01G0947

GhIAA4_D01

Down

− 2.7321

Auxin

Gh_A02G0341

GhIAA14_A02

INDOLE-3-ACETIC ACID INDUCIBLE 14

Down

− 1.1472

Auxin

Gh_A11G1164

GhIAA16_A11

INDOLE-3-ACETIC ACID INDUCIBLE 16

Down

− 2.6413

Auxin

Gh_D05G0472

GhIAA18_D05

INDOLE-3-ACETIC ACID INDUCIBLE 18

Down

− 3.8157

Auxin

Gh_A05G0356

GhIAA18_A05

Down

− 1.5554

Auxin

Gh_A06G1644

GhIAA19_A06

INDOLE-3-ACETIC ACID INDUCIBLE 19

Down

− 3.9605

Auxin

Gh_D10G1512

GhIAA19_D10

Down

− 6.1937

Auxin

Gh_A05G1607

GhIAA24_A05

INDOLE-3-ACETIC ACID INDUCIBLE 24

Down

− 1.319

Auxin

Gh_D05G1792

GhIAA24_D05

Down

− 1.1334

Auxin

Gh_D11G1228

GhIAA29_D11

INDOLE-3-ACETIC ACID INDUCIBLE 29

Down

− 1.8453

Auxin

Gh_D11G0514

GhGH3.1_D11

ENCODING A PROTEIN SIMILAR TO IAA-AMIDO SYNTHASES GH3.1

Down

− 2.4801

Auxin

Gh_A11G1077

GhGH3.3_A11

ENCODING AN PROTEIN SIMILAR TO IAA-AMIDO SYNTHASES GH3.3

Down

− 1.6851

Auxin

Gh_D13G0668

GhGH3-10_D13

ENCODING AN PROTEIN SIMILAR TO IAA-AMIDO SYNTHASES GH3-10

Down

− 2.692

Auxin

Gh_A11G0443

GhGH3-10_A11

Down

− 2.0607

Auxin

Gh_A13G0480

GhGH3-10_A13

Down

− 1.2652

Auxin

Gh_D02G2216

GhSAUR1_D02

SMALL AUXIN UP-REGULATED RNA11

Down

− 2.3625

Auxin

Gh_D12G0291

GhSAUR12_D12

SMALL AUXIN UPREGULATED RNA12

Down

− 2.747

Auxin

Gh_A13G0578

GhSAUR48_A13

SMALL AUXIN UPREGULATED RNA48

Down

− 1.0704

Auxin

Gh_D12G0289

GhSAUR52_D12

SAUR52, SMALL AUXIN UPREGULATED RNA52

Down

− 1.0695

Auxin

Gh_D10G0616

GhPAP1_D10

PURPLE ACID PHOSPHATASE 1

Down

− 1.998

Auxin

Gh_A02G1156

GhPAP2_A02

PURPLE ACID PHOSPHATASE 2

Down

− 1.7051

Auxin

Gh_A05G1076

GhPAP2_A05

Down

− 1.289

 

Gh_A03G1804

GhLAX2_A03

LIKE AUXIN RESISTANT 2

Down

− 2.3804

Auxin

Gh_D01G1617

GhLAX2_D01

Down

− 3.069

Auxin

Gh_A01G1374

GhLAX2_A01

Down

− 2.3246

Auxin

Gh_D09G1378

GhTIR1_D09

AUXIN RECEPTOR, TRANSPORT INHIBITOR RESPONSE 1

Down

− 3.9574

Auxin

Gh_D09G2152

GhTIR1_D09

Down

− 2.3805

Auxin

Gh_A12G1016

GhARF11_A12

AUXIN RESPONSE FACTOR 11

Down

− 1.6769

Auxin

Gh_A07G1254

GhARF18_A07

AUXIN RESPONSE FACTOR 18

Down

− 1.345

Auxin

Gh_Sca005214G02

GhARR2_S

RESPONSE REGULATOR 2

Down

− 1.8818

Cytokinin

Gh_D05G2656

GhARR7_D05

RESPONSE REGULATOR 7

Down

− 1.2673

Cytokinin

Gh_A11G2364

GhAHP5_A11

HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5

Down

− 1.0153

Cytokinin

Gh_A11G1389

GhAHK2_A11

HISTIDINE KINASE 2

Down

− 1.151

Cytokinin

Gh_D01G1042

GhCYCD3;2_D01

CYCLIN D3;2

Down

− 2.2107

Cytokinin

Gh_D05G0138

GhTGA7_D05

TGACG SEQUENCE-SPECIFIC BINDING PROTEIN 7

Down

− 1.4757

SA

Gh_A02G0775

GhTGA7_A02

Down

− 2.0558

SA

Gh_D12G1679

GhTGA8_D12

TGACG SEQUENCE-SPECIFIC BINDING PROTEIN 8

Down

− 3.7153

SA

Gh_A09G0903

GhTGA9_A09

TGACG SEQUENCE-SPECIFIC BINDING PROTEIN 9

Down

1.3068

SA

Gh_A07G1202

GhPIF3_A07

PHYTOCHROME INTERACTING FACTOR 3

Down

− 1.1952

GA

Gh_D13G1847

GhGID1C_D13

GA INSENSITIVE DWARF1C

Down

− 1.7948

GA

Gh_A05G0308

GhHAB1_A05

HYPERSENSITIVE TO ABA1, NEGATIVE IN ABA SIGNALING

Down

− 1.0137

ABA

Gh_D01G1881

GhBAK1_D01

BRI1-ASSOCIATED RECEPTOR KINASE

Down

− 1.1379

BR

Gh_D05G2975

GhJAI3_D05

JASMONATE-INSENSITIVE 3

Down

− 1.8414

JA