Table 2 Selected DEGs in LYSZa3 compared to LYSZa2 related to alginate biosynthesis and type VI secretion system
Gene | Product name | Base mean | Fold change | Adj.p-value | LYSZa2 Mean | LYSZa3 Mean |
|---|---|---|---|---|---|---|
algD | GDP-mannose 6-dehydrogenase AlgD | 27,877.94 | 1091.52 | 0.00E+00 | 61.33 | 50,065.00 |
algX | Alginate biosynthesis protein AlgX | 1967.25 | 256.42 | 2.31E−236 | 18.33 | 3478.67 |
algA | Phosphomannose isomerase/guanosine 5'-diphospho-D-mannose pyrophosphorylase | 5853.40 | 238.02 | 0.00E+00 | 59.00 | 10,382.00 |
algE | Alginate production outer membrane protein AlgE precursor | 2204.36 | 221.80 | 3.29E−252 | 24.00 | 3889.33 |
algF | Alginate o-acetyltransferase AlgF | 1648.75 | 211.59 | 3.00E−242 | 18.67 | 2924.00 |
algL | Poly(beta-d-mannuronate) lyase precursor AlgL | 2134.58 | 182.28 | 4.64E−245 | 28.00 | 3766.33 |
alg44 | Alginate biosynthesis protein Alg44 | 1855.41 | 162.63 | 1.64E−285 | 27.33 | 3260.33 |
algJ | Alginate o-acetyltransferase AlgJ | 1033.36 | 154.76 | 2.12E−191 | 16.00 | 1783.33 |
algK | alginate biosynthetic protein AlgK precursor | 1171.78 | 145.20 | 2.18E−233 | 19.33 | 2043.00 |
alg8 | Alginate biosynthesis protein Alg8 | 2758.04 | 133.33 | 0.00E+00 | 49.67 | 4939.33 |
algI | Alginate o-acetyltransferase AlgI | 1457.21 | 59.29 | 1.83E−259 | 58.33 | 2501.67 |
algG | Alginate-c5-mannuronan-epimerase AlgG | 1682.20 | 16.89 | 1.73E−125 | 226.00 | 2793.33 |
hcpB | Secreted protein Hcp | 107.95 | − 4.46 | 1.17E−20 | 215.67 | 36.00 |
PA1663 | Sfa2 | 305.43 | − 4.46 | 2.74E−47 | 603.33 | 100.00 |
PA1666 | Lip2 | 159.33 | − 4.50 | 2.97E−24 | 319.00 | 52.67 |
PA2362 | DotU3 | 22.49 | − 4.54 | 4.95E−06 | 44.00 | 7.00 |
PA1660 | HsiG2 | 346.81 | − 4.63 | 1.56E−59 | 686.67 | 110.33 |
PA1662 | clpV2 | 1014.01 | − 4.63 | 3.41E−44 | 2020.67 | 318.00 |
PA1661 | HsiH2 | 246.25 | − 4.65 | 1.19E−39 | 488.33 | 77.67 |
PA1659 | HsiF2 | 163.52 | − 5.59 | 1.38E−34 | 334.00 | 43.00 |
PA1657 | HsiB2 | 842.21 | − 6.21 | 6.69E−109 | 1743.67 | 204.33 |
PA1658 | HsiC2 | 1839.66 | − 6.47 | 4.92E−141 | 3824.67 | 437.00 |
PA2364 | Lip3 | 32.22 | − 9.20 | 6.01E−13 | 70.33 | 5.67 |