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Table 2 Selected DEGs in LYSZa3 compared to LYSZa2 related to alginate biosynthesis and type VI secretion system

From: Pseudomonas aeruginosa modulates alginate biosynthesis and type VI secretion system in two critically ill COVID-19 patients

Gene Product name Base mean Fold change Adj.p-value LYSZa2 Mean LYSZa3 Mean
algD GDP-mannose 6-dehydrogenase AlgD 27,877.94 1091.52 0.00E+00 61.33 50,065.00
algX Alginate biosynthesis protein AlgX 1967.25 256.42 2.31E−236 18.33 3478.67
algA Phosphomannose isomerase/guanosine 5'-diphospho-D-mannose pyrophosphorylase 5853.40 238.02 0.00E+00 59.00 10,382.00
algE Alginate production outer membrane protein AlgE precursor 2204.36 221.80 3.29E−252 24.00 3889.33
algF Alginate o-acetyltransferase AlgF 1648.75 211.59 3.00E−242 18.67 2924.00
algL Poly(beta-d-mannuronate) lyase precursor AlgL 2134.58 182.28 4.64E−245 28.00 3766.33
alg44 Alginate biosynthesis protein Alg44 1855.41 162.63 1.64E−285 27.33 3260.33
algJ Alginate o-acetyltransferase AlgJ 1033.36 154.76 2.12E−191 16.00 1783.33
algK alginate biosynthetic protein AlgK precursor 1171.78 145.20 2.18E−233 19.33 2043.00
alg8 Alginate biosynthesis protein Alg8 2758.04 133.33 0.00E+00 49.67 4939.33
algI Alginate o-acetyltransferase AlgI 1457.21 59.29 1.83E−259 58.33 2501.67
algG Alginate-c5-mannuronan-epimerase AlgG 1682.20 16.89 1.73E−125 226.00 2793.33
hcpB Secreted protein Hcp 107.95 − 4.46 1.17E−20 215.67 36.00
PA1663 Sfa2 305.43 − 4.46 2.74E−47 603.33 100.00
PA1666 Lip2 159.33 − 4.50 2.97E−24 319.00 52.67
PA2362 DotU3 22.49 − 4.54 4.95E−06 44.00 7.00
PA1660 HsiG2 346.81 − 4.63 1.56E−59 686.67 110.33
PA1662 clpV2 1014.01 − 4.63 3.41E−44 2020.67 318.00
PA1661 HsiH2 246.25 − 4.65 1.19E−39 488.33 77.67
PA1659 HsiF2 163.52 − 5.59 1.38E−34 334.00 43.00
PA1657 HsiB2 842.21 − 6.21 6.69E−109 1743.67 204.33
PA1658 HsiC2 1839.66 − 6.47 4.92E−141 3824.67 437.00
PA2364 Lip3 32.22 − 9.20 6.01E−13 70.33 5.67
  1. Filtering criteria are fold change  4, adjusted p-value < 0.05 and base mean 20. Full list of DEGs is included in Additional file 8: Table S6