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Table 2 The expression of GGDEF, EAL, HD-GYP proteins in rpoS mutation and ancestral strains

From: rpoS-mutation variants are selected in Pseudomonas aeruginosa biofilms under imipenem pressure

ORF Name Domain signature Activity* RpoSP251L vs Ancestral FC p value RpoSQ266stop vs Ancestral FC p value
PA0169 siaD GGEEF DGC − 2.17 3.39E-10 − 2.21 2.09E-10
PA2572   YN-GYP 7.12 5.02E-202 19.45 1.16E-234
PA0847   GGDEF DGC 2.94 7.01E-42 3.09 4.48E-43
PA1107 roeA GGEEF DGC 2.16 3.15E-18 2.52 3.39E-23
PA1120 yfiN, GGDEF DGC 2.27 1.85E-19 2.85 2.19E-27
PA3343   GGEEF DGC 2.09 1.07E-29
PA3702 wspR GGEEF DGC 2.17 5.79E-25 2.55 3.33E-34
PA4929 nicD GGDEF DGC 5.4 1.61E-174 8.85 2.60E-236
PA0290   GGEEF ND 2 3.72E-17
PA0575 rmcA GGDEF, EAL ND 3.5 4.78E-92 4.63 3.54E-125
PA1181   GGDEF, ELL ND 3.18 3.48E-79 3.56 3.54E-125
PA2771   GGEEF ND 3.4 2.17E-60 4.25 4.65E-74
PA0861 rbdA GGDEF, ELL PDE 4.19 2.22E-140 6.93 7.11E-230
PA2072   GGDEF, EAL PDE 7.55 8.41E-222 14.62 6.89E-293
PA3311 nbdA AGDEF, EAL PDE 7.65 6.06E-252 13.56 1.66E-279
PA3825   EVL PDE 3 9.51E-46 3.45 9.00E-52
PA4108   HD-GYP PDE 3.42 2.03E-80 3.9 2.38E-92
PA4781   HD-GYP PDE 8.8 2.99E-306 14.18 2.78E-130
  1. *ND not determined, – not active, FC fold change