Table 2 The expression of GGDEF, EAL, HD-GYP proteins in rpoS mutation and ancestral strains
From: rpoS-mutation variants are selected in Pseudomonas aeruginosa biofilms under imipenem pressure
ORF | Name | Domain signature | Activity* | RpoSP251L vs Ancestral FC | p value | RpoSQ266stop vs Ancestral FC | p value |
|---|---|---|---|---|---|---|---|
PA0169 | siaD | GGEEF | DGC | − 2.17 | 3.39E-10 | − 2.21 | 2.09E-10 |
PA2572 |  | YN-GYP | – | 7.12 | 5.02E-202 | 19.45 | 1.16E-234 |
PA0847 | Â | GGDEF | DGC | 2.94 | 7.01E-42 | 3.09 | 4.48E-43 |
PA1107 | roeA | GGEEF | DGC | 2.16 | 3.15E-18 | 2.52 | 3.39E-23 |
PA1120 | yfiN, | GGDEF | DGC | 2.27 | 1.85E-19 | 2.85 | 2.19E-27 |
PA3343 |  | GGEEF | DGC | – | – | 2.09 | 1.07E-29 |
PA3702 | wspR | GGEEF | DGC | 2.17 | 5.79E-25 | 2.55 | 3.33E-34 |
PA4929 | nicD | GGDEF | DGC | 5.4 | 1.61E-174 | 8.85 | 2.60E-236 |
PA0290 |  | GGEEF | ND | – | – | 2 | 3.72E-17 |
PA0575 | rmcA | GGDEF, EAL | ND | 3.5 | 4.78E-92 | 4.63 | 3.54E-125 |
PA1181 | Â | GGDEF, ELL | ND | 3.18 | 3.48E-79 | 3.56 | 3.54E-125 |
PA2771 | Â | GGEEF | ND | 3.4 | 2.17E-60 | 4.25 | 4.65E-74 |
PA0861 | rbdA | GGDEF, ELL | PDE | 4.19 | 2.22E-140 | 6.93 | 7.11E-230 |
PA2072 | Â | GGDEF, EAL | PDE | 7.55 | 8.41E-222 | 14.62 | 6.89E-293 |
PA3311 | nbdA | AGDEF, EAL | PDE | 7.65 | 6.06E-252 | 13.56 | 1.66E-279 |
PA3825 | Â | EVL | PDE | 3 | 9.51E-46 | 3.45 | 9.00E-52 |
PA4108 | Â | HD-GYP | PDE | 3.42 | 2.03E-80 | 3.9 | 2.38E-92 |
PA4781 | Â | HD-GYP | PDE | 8.8 | 2.99E-306 | 14.18 | 2.78E-130 |