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Table 1 Summary of TopHat2 genomic alignments

From: Alterations of RNA splicing patterns in esophagus squamous cell carcinoma

Samples

Total reads

Mapped reads

Overall reads

Left

Right

Left

Right

Mapping_rate (%)

Aligned_pairs

B782N

51,906,891

51,906,891

45,391,832

42,285,862

84.50

39,419,636

B782T

20,187,921

20,187,921

18,022,068

16,864,424

86.40

15,851,609

B783N

22,772,025

22,772,025

20,876,811

20,292,461

90.40

19,220,668

B783T

22,026,613

22,026,613

20,199,656

19,665,894

90.50

18,669,500

B785N

23,881,681

23,881,681

21,879,991

20,946,206

89.70

19,806,614

B785T

27,545,958

27,545,958

25,310,820

24,617,731

90.60

23,314,980

B786N

19,526,756

19,526,756

18,043,943

17,643,909

91.40

16,752,687

B786T

20,424,033

20,424,033

18,841,925

18,319,670

91.00

17,453,969

B788N

22,166,170

22,166,170

20,319,140

19,346,438

89.50

18,276,699

B788T

19,329,401

19,329,401

17,949,865

17,468,161

91.60

16,651,551

B791N

25,487,339

25,487,339

22,803,788

22,091,751

88.10

20,629,163

B791T

19,730,469

19,730,469

17,587,161

16,688,030

86.90

15,713,877

B794N

21,773,037

21,773,037

20,089,962

18,134,197

87.80

17,197,455

B794T

27,630,784

27,630,784

24,796,070

22,364,260

85.30

20,946,236

B797N

24,393,756

24,393,756

22,517,747

21,882,580

91.00

20,713,525

B797T

20,082,035

20,082,035

18,745,753

18,269,290

92.20

17,451,339

B798N

32,153,939

32,153,939

29,786,198

26,930,352

88.20

25,572,896

B798T

32,468,547

32,468,547

30,246,172

27,414,170

88.80

26,154,479

B799N

25,194,910

25,194,910

23,448,172

21,151,887

88.50

20,095,525

B799T

20,897,751

20,897,751

19,481,307

17,526,890

88.50

16,701,290

B800N

26,328,835

26,328,835

24,474,467

22,048,959

88.40

20,927,261

B800T

24,186,510

24,186,510

22,481,444

20,362,666

88.60

19,317,914

B801N

22,799,054

22,799,054

21,390,618

19,363,520

89.40

18,518,368

B801T

26,946,581

26,946,581

25,259,555

22,713,737

89.00

21,717,932

B804N

27,121,722

27,121,722

25,391,238

22,801,422

88.80

21,774,130

B804T

24,985,226

24,985,226

23,383,899

21,149,641

89.10

20,212,413

C199N

29,776,640

29,776,640

26,261,213

25,254,804

86.50

23,366,546

C199T

35,651,673

35,651,673

30,502,787

29,013,594

83.50

26,708,316

C200N

21,494,047

21,494,047

19,784,129

19,242,503

90.80

18,270,154

C200T

19,588,861

19,588,861

17,953,109

17,510,470

90.50

16,566,068

SHEE

55,085,029

55,085,029

47,868,214

44,812,830

84.1

41,691,361

SHEEC

54,582,526

54,582,526

47,769,458

44,796,267

84.8

42,325,127