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Table 1 Summary of TopHat2 genomic alignments

From: Alterations of RNA splicing patterns in esophagus squamous cell carcinoma

Samples Total reads Mapped reads Overall reads
Left Right Left Right Mapping_rate (%) Aligned_pairs
B782N 51,906,891 51,906,891 45,391,832 42,285,862 84.50 39,419,636
B782T 20,187,921 20,187,921 18,022,068 16,864,424 86.40 15,851,609
B783N 22,772,025 22,772,025 20,876,811 20,292,461 90.40 19,220,668
B783T 22,026,613 22,026,613 20,199,656 19,665,894 90.50 18,669,500
B785N 23,881,681 23,881,681 21,879,991 20,946,206 89.70 19,806,614
B785T 27,545,958 27,545,958 25,310,820 24,617,731 90.60 23,314,980
B786N 19,526,756 19,526,756 18,043,943 17,643,909 91.40 16,752,687
B786T 20,424,033 20,424,033 18,841,925 18,319,670 91.00 17,453,969
B788N 22,166,170 22,166,170 20,319,140 19,346,438 89.50 18,276,699
B788T 19,329,401 19,329,401 17,949,865 17,468,161 91.60 16,651,551
B791N 25,487,339 25,487,339 22,803,788 22,091,751 88.10 20,629,163
B791T 19,730,469 19,730,469 17,587,161 16,688,030 86.90 15,713,877
B794N 21,773,037 21,773,037 20,089,962 18,134,197 87.80 17,197,455
B794T 27,630,784 27,630,784 24,796,070 22,364,260 85.30 20,946,236
B797N 24,393,756 24,393,756 22,517,747 21,882,580 91.00 20,713,525
B797T 20,082,035 20,082,035 18,745,753 18,269,290 92.20 17,451,339
B798N 32,153,939 32,153,939 29,786,198 26,930,352 88.20 25,572,896
B798T 32,468,547 32,468,547 30,246,172 27,414,170 88.80 26,154,479
B799N 25,194,910 25,194,910 23,448,172 21,151,887 88.50 20,095,525
B799T 20,897,751 20,897,751 19,481,307 17,526,890 88.50 16,701,290
B800N 26,328,835 26,328,835 24,474,467 22,048,959 88.40 20,927,261
B800T 24,186,510 24,186,510 22,481,444 20,362,666 88.60 19,317,914
B801N 22,799,054 22,799,054 21,390,618 19,363,520 89.40 18,518,368
B801T 26,946,581 26,946,581 25,259,555 22,713,737 89.00 21,717,932
B804N 27,121,722 27,121,722 25,391,238 22,801,422 88.80 21,774,130
B804T 24,985,226 24,985,226 23,383,899 21,149,641 89.10 20,212,413
C199N 29,776,640 29,776,640 26,261,213 25,254,804 86.50 23,366,546
C199T 35,651,673 35,651,673 30,502,787 29,013,594 83.50 26,708,316
C200N 21,494,047 21,494,047 19,784,129 19,242,503 90.80 18,270,154
C200T 19,588,861 19,588,861 17,953,109 17,510,470 90.50 16,566,068
SHEE 55,085,029 55,085,029 47,868,214 44,812,830 84.1 41,691,361
SHEEC 54,582,526 54,582,526 47,769,458 44,796,267 84.8 42,325,127