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Table 5 Details about the transcriptome data used in this work. Overall gene number is the number of mutual genes between all the transcriptome data

From: The metabolic network model of primed/naive human embryonic stem cells underlines the importance of oxidation-reduction potential and tryptophan metabolism in primed pluripotency

Protocol Year Data accession Technique Naive samples Primed samples Genes
Hanna et al. 2010 GSE21222 Microarray 6 12 21754
Gafni et al. 2013 GSE46872 Microarray 9 3 20002
Valamehr et al. 2014 GSE50868 Microarray 9 8 21754
Theunissen et al. 2014 GSE59435 Microarray 5 2 20015
Takashima et al. 2014 E-MTAB-2857 RNA-seq 3 3 15950
Qin et al. 2016 GSE69200 Microarray 6 6 20756
Guo et al. 2016 E-MTAB-4461 RNA-seq 9 NAa 58726
Warrier et al. 2017 PRJNA356255 RNA-seq 27 9 23375
Overall     74 43 14352
  1. aGuo et al. used the primed hESC samples data from Takashima et al., a previous study by the same research group