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Table 3 Features of SNPs used for haplotype analyses across the MBL2 locus

From: Impact of SNPs interplay across the locus of MBL2, between MBL and Dectin-1 gene, on women’s risk of developing recurrent vulvovaginal infections

dbSNP Identifiera

SNP position (5′ → 3′)b

Chromosome positionb

Secretorc

Region

Nucleotide change

rs11003125

− 618

52,772,254

L/H (aka − 550)

5′ near gene

C/G

rs11003124

− 495

52,772,131

 

5′ near gene

T/G

rs7084554

− 417

52,772,053

 

5′ near gene

T/C

rs36014597

− 404

52,772,040

 

5′ near gene

A/G

rs7096206

− 289

52,771,925

Y/X (aka − 221)

5′ near gene

G/C

rs11003123

− 138

52,771,774

 

5′ near gene

G/A

rs7095891

− 65

52,771,701

P/Q (aka + 4)

5′ near gene

C/T

rs1800450

+ 161

52,771,475

A/B (codon 54)

Exon1

G/A

rs10824792

+ 4873

52,766,446

 

3′UTR

T/C

rs2120132

+ 5037

52,766,280

 

3′UTR

T/C

rs2120131

+ 5058

52,766,258

 

3′UTR

T/G

rs2165813

+ 5090

52,766,224

 

3′UTR

G/A

rs2099903

+ 5217

52,766,097

 

3′UTR

C/A

rs2099902

+ 5225

52,766,089

 

3′UTR

T/C

  1. aNCBI dbSNP database (http://www.ncbi.nlm.nih.gov/SNP)
  2. bNCBI contig accession number NT_030059.14 (NCBI build 142, locus ID 4153)
  3. cDesignation extensively used in literature, is also followed in the present study, these four markers form the ‘secretor haplotypes’