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Table 3 Features of SNPs used for haplotype analyses across the MBL2 locus

From: Impact of SNPs interplay across the locus of MBL2, between MBL and Dectin-1 gene, on women’s risk of developing recurrent vulvovaginal infections

dbSNP Identifiera SNP position (5′ → 3′)b Chromosome positionb Secretorc Region Nucleotide change
rs11003125 − 618 52,772,254 L/H (aka − 550) 5′ near gene C/G
rs11003124 − 495 52,772,131   5′ near gene T/G
rs7084554 − 417 52,772,053   5′ near gene T/C
rs36014597 − 404 52,772,040   5′ near gene A/G
rs7096206 − 289 52,771,925 Y/X (aka − 221) 5′ near gene G/C
rs11003123 − 138 52,771,774   5′ near gene G/A
rs7095891 − 65 52,771,701 P/Q (aka + 4) 5′ near gene C/T
rs1800450 + 161 52,771,475 A/B (codon 54) Exon1 G/A
rs10824792 + 4873 52,766,446   3′UTR T/C
rs2120132 + 5037 52,766,280   3′UTR T/C
rs2120131 + 5058 52,766,258   3′UTR T/G
rs2165813 + 5090 52,766,224   3′UTR G/A
rs2099903 + 5217 52,766,097   3′UTR C/A
rs2099902 + 5225 52,766,089   3′UTR T/C
  1. aNCBI dbSNP database (http://www.ncbi.nlm.nih.gov/SNP)
  2. bNCBI contig accession number NT_030059.14 (NCBI build 142, locus ID 4153)
  3. cDesignation extensively used in literature, is also followed in the present study, these four markers form the ‘secretor haplotypes’