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Table 2 Known miRNAs identified in four life stages libraries of An. sinensis

From: Characterization and potential role of microRNA in the Chinese dominant malaria mosquito Anopheles sinensis (Diptera: Culicidae) throughout four different life stages

miRNA name Sequences Length Location Tags per million (TPM)
ASE ASL ASP ASA
asi-miR-276-3p UAGGAACUUCAUACCGUGCUC 21 KE525297.1:1458670..1458650:+ 167,805.76 318,655.14 451,492.06 316,672.78
asi-miR-9a UCUUUGGUUAUCUAGCUGUAUGA 23 KE525001.1:301001..301023:− 141,229.57 137,568.26 57,223.48 27,174.76
asi-miR-1 UGGAAUGUAAAGAAGUAUGGAG 22 KE524975.1:1035748..1035769:− 187,484.83 88,731.09 100,424.03 115,685.16
asi-miR-100 AACCCGUAGAUCCGAACUUGUG 22 KE525346.1:1178073..1178052+ 5057.84 38,962.34 97,988.23 78,039.03
asi-miR-8-3p UAAUACUGUCAGGUAAAGAUGUC 23 KE525347.1:277471..277449:+ 2933.19 35,223.24 16,842.53 56,364.03
asi-miR-999 UGUUAACUGUAAGACUGUGUCU 22 KE525161.1:40638..40659:- 17,377.27 34,087.38 38,041.81 55,432.34
asi-miR-11-3p CAUCACAGUCUGAGUUCUUGCU 22 KE525297.1:1145644..1145665− 21,936.31 33,023.90 11,854.78 18,914.99
asi-miR-184 UGGACGGAGAACUGAUAAGGGC 22 KE525421.1:213400..213421:− 27,788.31 26,840.31 15,801.40 19,820.19
asi-miR-7 UGGAAGACUAGUGAUUUUGUUGU 23 KE525340.1:256575..256553:+ 69,849.63 25,689.28 18,252.89 35,200.06
asi-miR-281-3p UGUCAUGGAAUUGCUCUCUUUA 22 KE525349.1:2646148..2646169:− 5649.35 25,360.08 6667.99 34,188.91
asi-miR-9c-5p UCUUUGGUAUUCUAGCUGUAGA 22 KE525317.1:660185..660164:+ 25,959.34 23,472.43 13,744.82 18,872.14
asi-miR-263a-5p AAUGGCACUGGAAGAAUUCACGG 23 KE525098.1:220160..220138:+ 53,603.64 19,911.93 33,053.10 12,860.57
asi-miR-306 UCAGGUACUGGAUGACUCUCAG 22 KE525317.1:662779..662758:+ 26,686.89 17,783.81 6780.18 12,437.57
asi-miR-305-5p AUUGUACUUCAUCAGGUGCUCUGG 24 KE524841.1:15363..15386:− 4162.66 17,523.48 19,993.02 11,341.51
asi-miR-9b ACUUUGGUGAUUUUAGCUGUAUG 23 KE525317.1:663617..663595:+ 13,191.15 13,483.19 3319.73 10,659.89
asi-miR-10 ACCCUGUAGAUCCGAAUUUGUU 22 KE525233.1:711575..711554:+ 75,624.85 12,681.21 8573.87 8382.08
asi-miR-1174 UCAGAUCUACUUCAUACCCAUG 22 KE525248.1:186355..186334+ 5123.51 11,635.24 1359.33 7155.15
asi-miR-279 UGACUAGAUCCACACUCAUUAA 22 KE525236.1:156609..156588+ 7462.21 10,187.69 8815.69 7220.59
asi-miR-281-5p AAGAGAGCUAUCCGUCGAC 19 KE525349.1:2646188..2646206:− 1793.94 8863.89 2189.07 10,265.71
asi-miR-278-3p UCGGUGGGACUUUCGUCCGUUU 22 KE525347.1:4349292..4349271:+ 579.48 8851.05 2287.00 2259.11
asi-miR-13-3p UAUCACAGCCAUUUUGACGAGUU 23 KE525350.1:1783388..1783366+ 9781.06 7638.14 4976.66 4480.83
asi-miR-275-3p UCAGGUACCUGAAGUAGCGC 20 KE524841.1:27273..27292:− 511.15 6568.82 5975.96 5463.93
asi-let-7 UGAGGUAGUUGGUUGUAUAGU 21 KE525346.1:11781486..1181466:+ 61.76 6319.01 12,631.90 15,097.09
asi-miR-1175-5p AAGUGGAGUAGUGGUCUCAUCG 22 KE525248.1:186488..1864678:+ 1350.50 5971.13 98.09 1610.20
asi-miR-2765 UGGUAACUCCACCACCGUUGGC 22 KE524732.1:275289..27549:− 35.18 5915.09 37.08 14.02
asi-miR-2c UAUCACAGCCAGCUUUGAUGAGC 23 KE525350.1:1783822..1783800+ 5517.23 5218.17 4288.76 2824.67
asi-miR-2b UAUCACAGCCAGCUUUGAUGAGCU 24 KE525350.1:1783823..1783800+ 5510.66 5214.67 4290.50 2825.45
asi-miR-2a-3p UAUCACAGCCAGCUUUGAAGAGC 23 KE525350.1:1783565:1783543:+ 3337.86 4938.00 2844.96 2808.31
asi-miR-14 UCAGUCUUUUUCUCUCUCCUAU 22 KE525231.1:338814..338835:− 4248.19 4844.61 9771.57 11,007.32
asi-miR-34-5p UGGCAGUGUGGUUAGCUGGUUG 22 KL645799.1:184..163:+ 35.18 4643.82 102.85 16,234.44
asi-miR-375 UUUGUUCGUUUGGCUCGAGUUA 22 KE525304.1.363119..363140:− 2327.29 2722.32 7.45 25.71
asi-miR-8-5p CAUCUUACCGGGCAGCAUUAGA 22 KE525347.1:277430..277409:+ 1309.69 2236.69 1534.12 4757.38
asi-miR-1175-3p UGAGAUUCUACUUCUCCGACUUAA 24 KE525248.1:186528..186505:+ 50.35 2225.02 88.11 925.46
asi-miR-315-5p UUUUGAUUGUUGCUCAGAAAGC 22 KE524190.1:262690..262711:− 12,578.06 2041.74 778.55 765.76
asi-miR-252-5p UAAGUACUAGUGCCGCAGGAG 21 KE525267.1:347072..347092:− 2708.81 1847.96 1507.97 2164.85
asi-miR-317 UGAACACAUCUGGUGGUAUCUCAGU 25 KE524744.1:7138..7162:− 7.04 1746.39 127.72 2322.21
asi-miR-190 AGAUAUGUUUGAUAUUCUUGGUUG 24 KE525352.1:3462214..3462237:− 2311.34 1737.06 1090.57 2010.61
asi-miR-283 UAAAUAUCAGCUGGUAAUUCU 21 KE524901.1:23378..23398:− 2555.73 1557.28 621.19 1756.65
asi-miR-957 UGAAACCGUCCAAAACUGAGGC 22 KE525321.1:54139..54160:− 237.51 1363.50 1523.98 1921.02
asi-miR-998 UAGCACCAUGAGAUUCAGC 19 KE524842.1:1145486..1145504:+ 621.23 1236.25 352.11 509.47
asi-miR-263b-5p CUUGGCACUGGGAGAAUUCACAG 23 KE524589.1:97550..97528:+ 3141.31 1188.39 2647.35 1553.33
asi-miR-71-5p AGAAAGACAUGGGUAGUGAGAU 22 KE525350.1:1781736..1781715:+ 220.47 968.92 375.73 419.88
asi-miR-92b-3p AAUUGCACUUGUCCCGGCCUGC 22 KE523980.1:64015..64036:+ 647.34 938.57 175.74 151.91
asi-miR-277-3p UAAAUGCACUAUCUGGUACGAC 22 KE524932.1:25145..25166:– 891.26 797.32 15455.79 23,261.05
asi-miR-71-3p UCUCACUACCUUGUCUUUCAUG 22 KE525350.1:1781809..1781788:+ 346.19 652.56 309.17 257.85
asi-miR-125-5p UCCCUGAGACCCUAACUUGUGA 22 KE525346.1:1182133..1182112:+ 9.69 644.39 1732.05 1625.78
asi-miR-970 UCAUAAGACACACGCGGCUAU 21 KE525003.1:917073..917053:+ 603.56 630.38 650.98 843.66
asi-miR-981 UUCGUUGUCGACGAAACCUGCA 22 KE524855.1:1042040..1042019:+ 686.74 611.71 1152.22 895.08
asi-miR-31 UGGCAAGAUGUUGGCAUAGCUGA 23 KE524855.1:565934..565957:− 178.72 584.86 403.62 531.28
asi-miR-iab-4-5p ACGUAUACUGAAUGUAUCCUGA 22 KE525233.1:295585..295606:− 3101.28 573.18 135.96 222.80
asi-miR-12-5p UGAGUAUUACAUCAGGUACUGGU 23 KE524901.1:21292..21314:+ 512.40 554.50 502.18 771.99
asi-miR-92a-3p UAUUGCACUUGUCCCGGCCUA 21 KL646680.1:1643..1623:+ 572.28 552.17 152.45 129.31
asi-miR-9c-3p UAAAGCUUUAGUACCAGAGGUC 22 KE525317.1:660231..660210:+ 383.40 551.00 248.64 310.82
asi-miR-133 UUGGUCCCCUUCAACCAGCUGU 22 KE524620.1:429840..429861:− 264.41 441.27 500.12 662.93
asi-miR-305-3p CGGCACAUGUUGGAGUACACUUA 23 KE524841.1:15325..15347:− 160.90 429.59 460.98 166.71
asi-miR-282-5p AAUCUAGCCUCUCCUAGGCUUUGUCUG 27 KE525264.1:323815..323789:+ 1.25 391.07 73.37 52.19
asi-miR-996 UGACUAGAUUACAUGCUCGUC 21 KE525286.1:157381..157361:+ 107.26 347.88 231.05 482.98
asi-miR-87 GGUGAGCAAAUAUUCAGGUGU 21 KE524974.1:1235367..1235347:+ 320.39 326.87 406.47 736.16
asi-miR-993 UACCCUGUAGUUCCGGGCUUUU 22 KE525233.1:748304..748325:− 3470.14 261.49 182.08 255.51
asi-miR-989 UGUGAUGUGACGUAGUGGUAC 21 KE525091.1:234485..234465:+ 420.77 246.32 956.98 20,202.68
asi-miR-1890 UGAAAUCUUUGAUUAGGUCUGG 22 KE524970.1:186795..186816:+ 1025.26 245.15 900.89 499.34
asi-miR-137 UAUUGCUUGAGAAUACACGUAG 22 KE525275.1:771433..771454:− 745.69 222.97 334.05 453.38
asi-miR-932-5p UCAAUUCCGUAGUGCAUUGCAG 22 KE525415.1:21588..321609:− 22.67 221.80 552.42 627.10
asi-miR-965 UAAGCGUAUAGCUUUUCCCAUU 22 KE524970.1:286640..286719:+ 137.60 171.60 72.74 103.61
asi-miR-276-5p AGCGAGGUAUAGAGUUCCUAC 21 KE525297.1:1458630..1458610:+ 41.75 128.41 118.69 180.73
asi-miR-1000 AUAUUGUCCUGUCACAGCAGU 21 KE524842.1:961875..961895:+ 912.06 126.08 133.27 148.01
asi-miR-13a-3p UAUCACAGCCAUUUUGAUGAGU 22 KE525350.1:1782958..1782938:+ 33.62 74.71 41.04 49.86
asi-miR-2944a-5p GAAGGAACUUCUGCUGUGAUCUGA 24 KE525343.1:1543524..1543501:+ 42,259.28 64.21 17.75 61.54
asi-miR-285 UAGCACCAUUCGAAAUCAGUAC 22 KE525331.1:1654228..1654249:+ 7.97 52.53 617.71 701.10
asi-miR-79-3p UAAAGCUAGAUUACCAAAGCAU 22 KE525317.1:663064..663043:+ 65.52 51.36 30.90 22.59
asi-miR-210 CUUGUGCGUGUGACAACGG 19 KE525157.1:631346..631328:+ 39.25 49.03 119.48 330.30
asi-miR-124 UAAGGCACGCGGUGAAUGC 19 KE525231.1:190116..190134:− 91.16 47.86 43.58 50.64
asi-miR-988-5p GUGUGCUUUGUGACAAUGAGA 21 KE525307.1:126115..126135:+ 75.21 40.86 36.61 70.11
asi-miR-307 CACAACCUCCUUGAGUGAGCGA 22 KE525347.1:4066618..4066639:− 11.88 29.18 32.64 41.29
asi-miR-252-3p CUGCUGCCCAAGUGCUUAUCG 21 KE525267.1:347039..347059:− 6.25 22.18 10.30 11.69
asi-miR-988-3p CCCCUUGUUGCAAACCUCACGC 22 KE525307.1:126074..106095:+ 17.98 18.68 12.36 24.15
asi-miR-33 GUGCAUUGUAGUUGCAUUGCA 21 KE524855.1:1060739..1060719:− 0.47 8.17 1.43 2.34
asi-miR-2944b-5p GAAGGAACUCCCGGUGUGAUAUA 23 KE525324.1:712584..712563+ 2128.40 5.84 2.38 7.01
asi-miR-79-5p GCUUUGGCGCUUUAGCUGUAUGA 23 KE525317.1:663023..663001:+ 16.89 5.84 1.43 6.23
asi-miR-929 AUUGACUCUAGUAGGGAGUCC 21 KE524723.1:863..843:+ 11.26 5.84 11.09 12.46
asi-miR-277-5p CGUGUCAGAAGUGCAUUUACA 21 KE524932.1:25192..25212:− 4.53 4.67 97.93 52.97
asi-miR-286b UGACUAGACCGAACACUCGUAUCCC 25 KE525324.1:712419..712396:+ 10,890.76 2.33 10.30 24.93
asi-miR-2944b-3p UAUCACAGCAGUAGUUACCUGA 22 KE525324.1:712629..712610 124.93 2.33 0.16 0.78
asi-miR-193 UACUGGCCUACUAAGUCCCAAC 22 KE524784.1:191638..191659:− 39.72 2.33 251.96 24.15
asi-miR-219 UGAUUGUCCAAACGCAAUUCUUG 23 KE525339.1:431460..431438:+ 2.50 2.33 5.23 0.78
asi-miR-286a UGACUAGACCGAACACUCGCGUCCU 25 KE525343.1:1543040..1543016:+ 227.04 1.17 0.32 0.00
asi-miR-263b-3p UGGAUCUUUUCGUGCCAUCGU 21 KE524589.1:97592..97572:+ 9.54 1.17 3.01 1.56
asi-miR-308-3p AAUCACAGGAGUAUACUG 18 KE524853.1:228639..228622:+ 2.19 1.17 1.27 3.12
asi-miR-4968-3p CAGCAACAGCAGCAGCAGCAGA 22 KE525077.1:54358:54337:+ 0.31 1.17 0.00 0.00
asi-miR-275-5p CGCGCUAAGCAGGAACCGAGAC 22 KE524841.1:27320..27337:− 0.00 1.17 0.63 0.00
asi-miR-2943 UUAAGUAGGCACUUGCAGGCAAA 23 KE525350.1:266997..266975+ 5825.57 0.00 0.00 0.00
asi-miR-2944a-3p UAUCACAGUAGUUGUACUUUAA 22 KE525324.1:712814..712793:+ 225.32 0.00 0.16 0.78
asi-miR-309a UCACUGGGCAAAGUUUGUCGC 21 KE525324.1:713000..712980:+ 65.67 0.00 0.00 3.90
asi-miR-315-3p CUUUCGAGCAGUAAUCAAAGUC 22 KE524190.1:262648..262669:− 2.19 0.00 0.00 0.78
asi-miR-1891 UGAGGAGUUAAUUUGCGUGUUU 22 KE525346.1:7507..7486:+ 1.41 0.00 0.95 2434.39
asi-miR-980-3p UAGCUGCCUAGUGAAGGGC 19 KE524190.1:422320..422338:+ 1.25 0.00 2.54 10.13
asi-miR-13-5p UCGUAAAAAUGGUUGUGCUGUG 22 KE524905.1:90055..90038:+ 0.63 0.00 0.63 0.00
asi-miR-iab-4-3p CGGUAUACCUUCAGUAUACGUAAC 24 KE525233.1:295549..295572:− 0.63 0.00 0.00 0.00
asi-miR-2491-3p CAACAACAGCAGCAGCAA 18 KL646034.1:671..688:+ 0.00 0.00 0.16 0.00