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Table 3 CRISPR-Cas9 mediated genome editing in plants

From: Plant genome editing with TALEN and CRISPR

Plant species Target gene Modification Reference
Arabidopsis PDS3, FLS2, RACK1b, RACK1c NHEJ [96]
Arabidopsis BRI1, GAI, JAZ1 NHEJ [149, 150]
Arabidopsis CHLI1, CHLI2, TT4, AP1, GL2 NHEJ [150152]
Arabidopsis GFP (transgene) NHEJ [153, 154]
Arabidopsis ADH1, TT4, RTEL, GUS (transgene) NHEJ, HDR [85, 86]
Arabidopsis FT, SPL4 NHEJ [155]
Arabidopsis ABP1 NHEJ [71]
Arabidopsis Cru3 NHEJ [156]
Arabidopsis TRY, CPC, ETC2, CHIL1, CHIL2 NHEJ [79, 157]
Arabidopsis 1g03180, 1g16210, 1g56650, 5g55580 NHEJ [80]
Arabidopsis 05g55580, 1g56650, 1g03180, 1g16210 NHEJ [80]
Arabidopsis PHYB, BRI1 NHEJ [123]
Arabidopsis BRI1, PDS3 NHEJ [158]
Arabidopsis PYR1, PYL1, PYL2, PYL4, PYL5, PYL8 NHEJ [82]
Arabidopsis SH3P3 NHEJ [159]
Arabidopsis eIF(iso)4E NHEJ [57]
Arabidopsis CBF1, CBF2, CBF3 NHEJ [63, 160]
Arabidopsis DM2 NHEJ [161]
Arabidopsis UGT79B2, UGT79B3 NHEJ [162]
Arabidopsis CWIN1 NHEJ [163]
Arabidopsis MIR169a, MIR827a, TFL1 NHEJ, HDR [77]
Arabidopsis TTG1 NHEJ [164]
Barley HvPM19 NHEJ [165]
Cabbage BoIC.GA4.a NHEJ [165]
Camelina FAD2 NHEJ [69, 70]
C. reinhardtii CpFTSY, ZEP NHEJ [166]
Cotton GFP (transgene) NHEJ [167]
Cotton MYB25-like A, MYB25-like D NHEJ [67]
Cotton CLA1, VP NHEJ [68]
Dandelion 1-FFT NHEJ [168]
Flax EPSPS, BFP (transgene) NHEJ, HDR [169]
Grape IdnDH NHEJ [170]
Lettuce BIN2 NHEJ [123]
Liverwort ARF1 NHEJ [171]
Lotus japonicus SYMRK, LjLb1, LjLb2, LjLb3 NHEJ [172]
Maize IPK NHEJ [139]
Maize LIG1, Ms26, Ms45, ALS1, ALS2 NHEJ, HDR [173]
Maize PSY1, and other 90 loci NHEJ [174]
Maize ZB7, 2g332562, 2g080129, 2g099580, 2g170586, 2g438243, NHEJ [175]
Maize ARGOS8 NHEJ [176]
Maize AGO18a, Ago18b, a1, a4 NHEJ [177]
Moss PpAPT NHEJ, HDR [178]
Moss PpKAI2L, PpAP2/ERF NHEJ [179]
N. oceanica NR NHEJ [180]
N. attenuata AOC NHEJ [123, 159]
N. benthamiana PDS3 NHEJ, HDR [96]
N. benthamiana PDS NHEJ [181183]
N. benthamiana PCNA, PDS NHEJ [60]
N. benthamiana FLS2, BAK1 NHEJ [81]
N. benthamiana PDS, blspH NHEJ [184]
N. benthamiana XT1, XT2 NHEJ [185]
N. benthamiana EDS1a, PAD4 NHEJ [161]
N. tabacum GFP (transgene) NHEJ [153]
N. tabacum PDS, PDR6 NHEJ [186]
N. tabacum mCherry (transgene) NHEJ [187]
Petunia PDS NHEJ [188]
Petunia NR NHEJ [189]
Populus 4CL1, 4CL2, 4CL5 NHEJ [64]
Populus PDS NHEJ [190, 191]
Potato IAA2 NHEJ [192]
Potato ALS NHEJ [142, 193]
Potato GBSS NHEJ [194]
Potato MYB44 NHEJ [195]
Rice PDS, BADH2, MPK2, 02g23823 NHEJ [65, 83]
Rice MPK5 NHEJ [196]
Rice ROC5, SPP, YSA NHEJ [149, 197]
Rice MYB1 NHEJ [151, 197]
Rice DERF1, EPSPS, MSH1, PDS, PMS3 NHEJ [197]
Rice SWEET11 NHEJ [198]
Rice SWEET11, SWEET14 NHEJ [153]
Rice CAO1, LAZY1 NHEJ [199]
Rice BEL NHEJ [200]
Rice SWEET11, SWEET13, SWEET1a, SWEET1b, CPS4, CYP99A2, CYP76M5, CYP76M6, KO1, KOL5 NHEJ [76]
Rice CDKA2, CDKB1, CDKB2 NHEJ [201]
Rice MPK1, MPK2, MPK5, MPK6, PDS NHEJ [202]
Rice ALS HDR [97, 98]
Rice GSTU, MRP15, ANP, WAXY, 7 FTL genes, and 21 other genes NHEJ [80]
Rice AOX1a, AOX1b, AOX1c, BEL NHEJ [203]
Rice DsRed (transgene), YSA, PDS, DL NHEJ [204, 205]
Rice P450, DWD1 NHEJ [123]
Rice RAV2 NHEJ [78]
Rice DMC1A, DMC1B NHEJ [87]
Rice NAL1, LPA1, LG1, GL1-1 NHEJ [206]
Rice DEP1, ROC5 NHEJ [207]
Rice Gn1a, DEP1, GS3, IPA1 NHEJ [53]
Rice ERF922 NHEJ [56]
Rice OST2 NHEJ [208]
Rice CSA NHEJ [54]
Rice RUPO NHEJ [209]
Rice EPSPS NHEJ, HDR [210]
Rice TMS5 NHEJ [55]
Rice PMR NHEJ [211]
Rice MEGs, PEGs NHEJ [212]
Rice Hd2, Hd4, Hd5 NHEJ [213]
Rice SBEI, SBEIIB NHEJ [214]
Rice ACT, GST HDR [99]
Rice RBOHH NHEJ [215]
Rice EPFL9 NHEJ [116]
Salvia miltiorrhiza CPS1 NHEJ [216]
Sorghum DsRED2 (transgene) NHEJ [153]
Soybean GFP (transgene), 07g14530, 01g38150, 11g07220, miR1514, miR1509 NHEJ [217]
Soybean 06g14180, 08g02290, 09g00490, 12g37050 NHEJ [218]
Soybean PDS11, PDS18 NHEJ [147]
Soybean DD20, DD43, ALS NHEJ, HDR [219]
Soybean FEI1, FEI2, SHR, bar (transgene) NHEJ [220]
Soybean Rj4 NHEJ [72]
Sweet orange PDS NHEJ [221]
Sweet orange LOB1 NHEJ [222]
Tomato SHR, GFP (transgene) NHEJ [223]
Tomato AGO, 08g041770, 07g021170, 12g044760 NHEJ [224]
Tomato RIN NHEJ [225]
Tomato PDS, PIF4 NHEJ [226]
Tomato SIAGL6 NHEJ [227]
Tomato SP5G NHEJ [228]
Tomato SIBOP NHEJ [229]
Tomato SIIAA9 NHEJ [230]
Tomato MLO NHEJ [231]
Wheat (common) MLO NHEJ [7, 65]
Wheat (common) INOX NHEJ [183]
Wheat (common) GASR7, GW2, DEP1, NAC2, PIN1, LOX2, NHEJ [66]
Wheat (common) Ubi, MLO HDR [100]
Wheat (Durum) GASR7 NHEJ [66]