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Table 2 Homology modelling of thermophilic viral ATPases

From: Adenosine triphosphatases of thermophilic archaeal double-stranded DNA viruses

Protein Length (AA) TM-score [0, 1]* RMSD (Å) Modelled amino acids Main parent model (PDB id) Reference
STIV B204 204 0.92 ± 0.06 2.5 ± 1.9 Met1-Ile204 4KFU** [7]
ATV P529 529 0.61 ± 0.14 9.4 ± 4.6 Met1-Tyr529 3CF1 (p97) [78]
ATV P618 618 0.57 ± 0.15 10.6 ± 4.6 Met1-Ser618 3NBX (RavA) [79]
  1. *A TM value > 0.5 implies that the model has the correct topology [82].
  2. **The STIV2 B204 structure in complex with AMPPCP (PDB: 4KFU) was used as a user-defined restraint.