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Table 2 Homology modelling of thermophilic viral ATPases

From: Adenosine triphosphatases of thermophilic archaeal double-stranded DNA viruses

Protein

Length (AA)

TM-score [0, 1]*

RMSD (Ã…)

Modelled amino acids

Main parent model (PDB id)

Reference

STIV B204

204

0.92 ± 0.06

2.5 ± 1.9

Met1-Ile204

4KFU**

[7]

ATV P529

529

0.61 ± 0.14

9.4 ± 4.6

Met1-Tyr529

3CF1 (p97)

[78]

ATV P618

618

0.57 ± 0.15

10.6 ± 4.6

Met1-Ser618

3NBX (RavA)

[79]

  1. *A TM value > 0.5 implies that the model has the correct topology [82].
  2. **The STIV2 B204 structure in complex with AMPPCP (PDB: 4KFU) was used as a user-defined restraint.
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Cell & Bioscience

ISSN: 2045-3701

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