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Table 4 44 target genes with fold changes<-2 in either FF or FFPE

From: Clinical biomarkers of pulmonary carcinoid tumors in never smokers via profiling miRNA and target mRNA

Gene Bonferroni P-value (FF sample set) FDR (Q-value) (FF sample set) Fold change (FF sample set) Bonferroni P-value (FFPE sample set) FDR (Q-value) (FFPE sample set) Fold change (FFPE sample set)
GLDN 3.17E - 08 4.20E - 10 −5.68982 0.000135 4.60E - 06 −2.52804
CLIC5 1.10E - 06 7.14E - 09 −5.29096 0.000128 4.60E - 06 −3.65321
GBP5 3.95E - 07 3.49E - 09 −4.70136 0.270449 0.002037 −3.34128
CPM 7.00E - 11 8.53E - 12 −4.22426 6.24E - 06 3.19E - 07 −2.34316
ATOH8 7.34E - 09 1.40E - 10 −3.94674 0.057324 0.000599 −3.35103
EXPH5 3.96E - 09 8.90E - 11 −3.62151 0.339217 0.002413 −2.18435
DKK2 1.03E - 09 3.00E - 11 −3.47820 0.135328 0.001155 −2.27702
CUGBP2 1.18E - 07 1.23E - 09 −3.42984 5.43E - 07 4.64E - 08 −2.62785
AQP4 0.000278 8.64E - 07 −3.37647 4.22E - 05 1.80E - 06 −2.62410
COL4A3 2.88E - 06 1.62E - 08 −3.29984 0.003631 6.89E - 05 −2.31972
LATS2 2.90E - 08 4.04E - 10 −3.26820 0.084228 0.000784 −2.67462
CXCL5 0.002516 6.07E - 06 −3.19053 1 0.028874 −1.51815
BNC2 1.13E - 06 7.16E - 09 −2.95318 1.42E - 05 6.62E - 07 −1.97542
CDKN2B 8.98E - 09 1.54E - 10 −2.92826 0.350879 0.002462 −2.06729
HAS3 2.39E - 06 1.37E - 08 −2.89151 1 0.041676 −1.52060
HNMT 8.23E - 10 2.67E - 11 −2.69590 0.000877 1.95E - 05 −1.80218
BACH2 7.75E - 07 5.52E - 09 −2.68793 0.05984 0.000613 −2.47454
NOTCH2 4.20E - 06 2.19E - 08 −2.68482 1 0.011439 −1.98234
PHACTR2 1.09E - 05 4.92E - 08 −2.66216 1 0.011696 −2.13119
AFF3 0.00117 3.08E - 06 −2.64327 0.330617 0.002385 −2.19623
PTPRB 2.98E - 07 2.86E - 09 −2.54037 0.006134 0.000105 −1.76936
IRAK3 3.10E - 06 1.68E - 08 −2.50010 0.06931 0.000683 −1.90606
ARHGAP28 1.24E - 09 3.23E - 11 −2.49453 0.00221 4.53E - 05 −2.07438
ARHGAP29 8.23E - 08 9.24E - 10 −2.46960 0.462337 0.002924 −2.11428
CCDC68 9.93E - 07 6.74E - 09 −2.46136 0.252319 0.00202 −1.79536
CENTD1 4.58E - 05 1.74E - 07 −2.45484 0.000286 7.99E - 06 −2.37418
PDGFRA 8.30E - 07 5.76E - 09 −2.45213 1 0.015458 −1.80164
IGF1 0.000385 1.17E - 06 −2.33199 1 0.017787 −1.55397
MAF 1.47E - 08 2.38E - 10 −2.32004 1 0.022448 −1.74096
CREB5 7.68E - 09 1.40E - 10 −2.29795 0.000166 5.31E - 06 −1.80701
QKI 5.96E - 10 2.32E - 11 −2.26821 0.0408 0.000498 −2.11396
OBFC2A 5.84E - 05 2.10E - 07 −2.22977 0.000653 1.52E - 05 −2.42411
CLEC5A 0.001482 3.73E - 06 −2.21928 0.072505 0.000688 −1.75105
COL4A4 0.001462 3.73E - 06 −2.18249 1 0.017007 −1.94555
PRTG 0.00085 2.30E - 06 −2.16704 0.000415 1.06E - 05 −3.39011
CTSS 7.00E - 07 5.24E - 09 −2.11030 1 0.045919 −1.46121
OSBPL3 4.65E - 06 2.38E - 08 −2.10227 0.05406 0.000583 −1.67649
BCL11B 0.01734 3.27E - 05 −2.09141 0.071549 0.000688 −2.19192
PRRG1 6.71E - 07 5.16E - 09 −2.08980 1 0.025403 −1.67003
ANTXR2 1.94E - 05 8.44E - 08 −2.06102 0.36279 0.002497 −1.90464
PGR 0.003108 7.26E - 06 −2.03599 0.480485 0.002965 −1.87897
BAALC 0.005685 1.24E - 05 −2.01197 0.009384 0.000146 −1.83602
LIMD1 4.71E - 05 1.76E - 07 −1.87690 0.617357 0.003677 −2.02599
NFIB 2.16E - 06 1.28E - 08 −1.49800 1 0.015881 −2.01869
  1. Note: If fold changes in the FF or FFPE sample sets are <-2, they are denoted in italics, respectively. If the Bonferroni P-value or FDR (Q-value) are <0.05 or <0.01, they are labeled in bold font, respectively.
  2. FF=Fresh Frozen tissues.
  3. FFPE=Formalin-Fixed Paraffin-Embedded tissues.
  4. FDR=False Discovery Rate.