Table 7 Top ten up- and down- regulated novel isoforms expressed only in normal synovial RNA or rheumatoid arthritis synovial RNA
From: RNA-seq analysis of synovial fibroblasts brings new insights into rheumatoid arthritis
Gene | Description | Coordinates | Length | FPKM Wildtype | FPKM RA | Ensembl gene ID |
|---|---|---|---|---|---|---|
GIPC1 | GIPC PDZ domain containing family. Member 1 | chr19:14588570-14606944 | 1650 | -- | 8.09135 | ENSG00000123159 |
MPPE1 | Metallophosphoesterase 1 | chr18:11883385-11908455 | 1973 | -- | 5.66007 | ENSG00000154889 |
- | NA | chr11:69066649-69184402 | 410 | -- | 5.19725 | NA |
EPB41L2 | Erythrocyte membrane protein band 4.1-like 2 | chr6:131160487-131384462 | 3393 | -- | 4.45046 | ENSG00000079819 |
MRPL14 | Mitochondrial ribosomal protein L14 | chr6:44072507-44123256 | 658 | -- | 4.29538 | ENSG00000180992 |
PPIEL | Peptidylprolyl isomerase E-like pseudogene | chr1:39987953-40025316 | 509 | -- | 4.21536 | ENSG00000243970 |
- | NA | chr6:166822859-167041186 | 3525 | -- | 3.83632 | NA |
- | NA | chr21:39607975-39679370 | 1369 | -- | 3.3631 | NA |
FAM101A | Family with sequence similarity 101. member A | chr12:124774147-124800566 | 2242 | -- | 3.16322 | ENSG00000178882 |
- | NA | chr4:39454172-39460535 | 666 | -- | 3.12642 | NA |
- | NA | chr20:30432079-30433458 | 1379 | 18.1953 | -- | NA |
GPAT2 | Glycerol-3-phosphate acyltransferase 2, mitochondrial | chr2:96687342-96700658 | 2732 | 6.12103 | -- | ENSG00000186281 |
PCDHGC5 | Protocadherin gamma subfamily C, 5 | chr5:140746308-140914003 | 4930 | 6.08509 | -- | ENSG00000240764 |
RSAD2 | Radical S-adenosyl methionine domain containing 2 | chr2:6988770-7038095 | 5210 | 4.87066 | -- | ENSG00000134321 |
HEYL | Hairy/enhancer of split related with YRPW motif-like | chr1:40089102-40105348 | 3872 | 4.34476 | -- | ENSG00000163909 |
GPR107 | G protein-coupled receptor 107 | chr9:132815745-132902440 | 3463 | 4.15184 | -- | ENSG00000148358 |
GOLGA2 | Golgin A2 | chr9:131018105-131038268 | 3014 | 2.8846 | -- | ENSG00000167110 |
HHIP | Hedgehog interacting protein | chr4:145567142-145660251 | 2628 | 2.57248 | -- | ENSG00000164161 |
ITIH3 | Inter-alpha-trypsin inhibitor heavy chain 3 | chr3:52828743-52838029 | 1944 | 2.20862 | -- | ENSG00000162267 |
HEATR5A | HEAT repeat containing 5A | chr14:31757730-31889797 | 6427 | 2.17675 | -- | ENSG00000129493 |