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Table 1 Genomic information of selected microorganisms considered as potential probiotic strains and some major food-borne pathogens used in this study

From: Phylogenetic identification of bacterial MazF toxin protein motifs among probiotic strains and foodborne pathogens and potential implications of engineered probiotic intervention in food

Organism

Strain

Pathotype /or others

GenBank Accession /Assembly

GC (%)

Genome Size (~ Mb)

Campylobacter upsaliensis

JV21

pathogenic

ASM18534v1

NA

1.6

Lactobacillus coleohominis

101-4-CHN

probiotic

ASM16193v1

41.3

1.7

Campylobacter jejuni

RM1221

pathogenic

NC_003912.7

30.3

1.8

Lactobacillus johnsonii

FI9785

probiotic

NC_013504.1

34.4

1.8

Pediococcus pentosaceus

ATCC 25745

probiotic

CP000422.1

37.4

1.8

Streptococcus thermophilus LMG

LMG 18311

probiotic

NC_006448.1

39.1

1.8

Lactobacillus gasseri

ATCC 33323

probiotic

NC_008530.1

35.3

1.9

Lactobacillus sakei subsp. sakei

23K

probiotic

NC_007576.1

41.3

1.9

Lactobacillus delbrueckii subsp. bulgaricus

ATCC 11842

probiotic

NC_008054.1

49.7

1.9

Lactobacillus delbrueckii subsp. bulgaricus

ATCC BAA-365

probiotic

NC_008529.1

49.7

1.9

Leuconostoc citreum

KM20

probiotic

ASM2640v1

38.9

1.9

Bifidobacterium animalis subsp. Lactis

Bl-04

probiotic

NC_012814.1

60.5

1.9

Bifidobacterium animalis subsp. Lactis

DSM 10140

probiotic

NC_012815.1

60.5

1.9

Bifidobacterium animalis subsp. Lactis

AD011

probiotic

NC_011835.1

60.5

1.9

Lactobacillus amylovorus

GRL1118

probiotics

ASM19411v1

38.0

2.0

Lactobacillus johnsonii

NCC 533

probiotic

NC_005362.1

34.6

2.0

Lactobacillus acidophilus

NCFM

probiotic

NC_006814.3

34.7

2.0

Lactobacillus reuteri

DSM 20016

probiotic

NC_009513.1

38.9

2.0

Lactobacillus reuteri

JCM 1112

probiotic

NC_010609.1

38.9

2.0

Listeria monocytogenes

FSL J1-208

pathogenic

ASM16843v1

37.7

2.0

Lactobacillus salivarius

UCC118

probiotic

NC_007929.1

33

2.1

Lactobacillus helveticus

DPC 4571

probiotic

NC_010080.1

37.1

2.1

Leuconostoc mesenteroides subsp. mesenteroides

ATCC 8293

probiotic

NC_008531.1

37.7

2.1

Campylobacter concisus

13826

pathogenic

NC_009802.1

39.3

2.1

Lactobacillus fermentum

IFO 3956

probiotic

NC_010610.1

51.5

2.1

Bifidobacterium adolescentis

ATCC 15703

probiotic

NC_008618.1

59.2

2.1

Bifidobacterium bifidum

PRL2010

probiotic

NC_014638.1

Na

2.2

Bifidobacterium bifidum

S17

probiotic

NC_014616.1

Na

2.2

Lactobacillus amylovorus

GRL 1112

probiotic

NC_014724.1

Na

2.2

Lactobacillus brevis

ATCC 367

probiotic

NC_008497.1

46.1

2.3

Lactobacillus crispatus

CTV-05

probiotic

ASM16588v1

37.1

2.3

Bifidobacterium longum

NCC2705

probiotic

NC_004307.2

60.1

2.3

Bifidobacterium longum subsp. longum

BBMN68

probiotic

NC_014656.1

Na

2.3

Bifidobacterium longum subsp. infantis

157F

probiotic

NC_015052.1

Na

2.4

Bifidobacterium longum subsp. longum

JCM 1217

probiotic

NC_015067.1

Na

2.4

Lactococcus lactis subsp. lactis

Il1403

probiotic

NC_002662.1

35.3

2.4

Bifidobacterium longum

DJO10A

probiotic

NC_010816.1

60.2

2.4

Bifidobacterium longum subsp. longum

JDM301

probiotic

NC_014169.1

Na

2.5

Lactococcus lactis subsp. cremoris

MG1363

probiotic

NC_009004.1

35.7

2.5

Listeria grayi

DSM 20601

pathogenic

ASM14899v1*

41.6

2.6

Propionibacterium freudenreichii subsp. shermanii

CIRM-BIA1

probiotic

NC_014215.1

Na

2.6

Lactococcus lactis subsp. lactis

KF147

probiotic

NC_013656.1

34.9

2.6

Lactococcus lactis subsp. cremoris

SK11

probiotic

NC_008527.1

35.8

2.6

Bifidobacterium dentium

Bd1

probiotic

NC_013714.1

58.5

2.6

Bifidobacterium longum subsp. infantis

ATCC 15697

probiotic

NC_011593.1

59.9

2.8

Listeria monocytogenes

EGD-e

pathogenic

NC_003210.1

38

2.9

Lactobacillus casei str.

Zhang

probiotic

NC_014334.1

40.1

2.9

Lactobacillus casei

ATCC 334

probiotic

NC_008526.1

46.6

2.9

Lactobacillus paracasei subsp. paracasei

ATCC 25302

probiotic

ASM15949v1

46.5

2.9

Lactobacillus rhamnosus

GG

probiotic

NC_013198.1

46.7

3.0

Lactobacillus rhamnosus

Lc 705

probiotic

NC_013199.1

46.7

3.0

Lactobacillus casei

BL23

probiotic

NC_010999.1

46.3

3.1

Lactobacillus plantarum

JDM1

probiotic

NC_012984.1

44.7

3.2

Enterococcus faecalis

V583

probiotic

NC_004668.1

37.4

3.3

Lactobacillus plantarum

WCFS1

probiotic

NC_004567.1

44.4

3.3

Lactobacillus plantarum subsp. plantarum

ST-III

probiotic

NC_014554.1

Na

3.4

Bacillus selenitireducens

MLS10

Bio agent

ASM9308v1

48.7

3.6

Bacillus pumilus

SAFR-032

probiotic

NC_009848.1

41.3

3.7

Coprobacillus sp.

29_1

Non-pathogenic

Coprobacillus_sp_29_1_V1

NA

3.8

Vibrio cholerae

M66-2

pathogenic

NC_012578.1

47.6

3.9

Bacillus halodurans

C-125

Non-pathogenic

ASM1114v1

43.7

4.2

Bacillus amyloliquefaciens

Y2

probiotic

ASM28439v1

45.9

4.2

Clostridium difficile

630

pathogenic

NC_009089.1

29.1

4.3

Bacillus clausii

KSM-K16

probiotic

NC_006582.1

44.8

4.3

Shigella dysenteriae

Sd197

pathogenic

ASM1200v1]

50.9

4.6

Shigella flexneri

8401

pathogenic

NC_008258.1

50.9

4.6

Salmonella enterica subsp. arizonae serovar

RSK2980

pathogenic

NC_010067.1

51.4

4.6

Enterobacter sp.

638

pathogenic

NC_009436.1

52.9

4.7

Vibrio vulnificus

CMCP6

pathogenic

NC_004459.2

46.7

5.1

Escherichia coli

E24377A

pathogenic

NC_009801.1

50.6

5.2

Citrobacter rodentium

ICC168

pathogenic

NC_013716.1

54.6

5.4

Klebsiella variicola

At-22

pathogenic

NC_013850.1

57.6

5.5

Bacillus megaterium

QM B1551

probiotic

ASM2582v1

38.0

5.5

Escherichia coli O157:H7

Sakai

pathogenic

NC_002695.1

50.5

5.6

Bacillus thuringiensis serovar israelensis

ATCC 35646

Bio agents

ASM16769v1

35.0

5.9

Lachnospiraceae bacterium

3_1_57FAA_CT1

Non-pathogenic

Lach_bact_3_1_57FAA_CT1_V1

NA

7.7

  1. *: assembly accession.