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Table 1 Genomic information of selected microorganisms considered as potential probiotic strains and some major food-borne pathogens used in this study

From: Phylogenetic identification of bacterial MazF toxin protein motifs among probiotic strains and foodborne pathogens and potential implications of engineered probiotic intervention in food

Organism Strain Pathotype /or others GenBank Accession /Assembly GC (%) Genome Size (~ Mb)
Campylobacter upsaliensis JV21 pathogenic ASM18534v1 NA 1.6
Lactobacillus coleohominis 101-4-CHN probiotic ASM16193v1 41.3 1.7
Campylobacter jejuni RM1221 pathogenic NC_003912.7 30.3 1.8
Lactobacillus johnsonii FI9785 probiotic NC_013504.1 34.4 1.8
Pediococcus pentosaceus ATCC 25745 probiotic CP000422.1 37.4 1.8
Streptococcus thermophilus LMG LMG 18311 probiotic NC_006448.1 39.1 1.8
Lactobacillus gasseri ATCC 33323 probiotic NC_008530.1 35.3 1.9
Lactobacillus sakei subsp. sakei 23K probiotic NC_007576.1 41.3 1.9
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 probiotic NC_008054.1 49.7 1.9
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 probiotic NC_008529.1 49.7 1.9
Leuconostoc citreum KM20 probiotic ASM2640v1 38.9 1.9
Bifidobacterium animalis subsp. Lactis Bl-04 probiotic NC_012814.1 60.5 1.9
Bifidobacterium animalis subsp. Lactis DSM 10140 probiotic NC_012815.1 60.5 1.9
Bifidobacterium animalis subsp. Lactis AD011 probiotic NC_011835.1 60.5 1.9
Lactobacillus amylovorus GRL1118 probiotics ASM19411v1 38.0 2.0
Lactobacillus johnsonii NCC 533 probiotic NC_005362.1 34.6 2.0
Lactobacillus acidophilus NCFM probiotic NC_006814.3 34.7 2.0
Lactobacillus reuteri DSM 20016 probiotic NC_009513.1 38.9 2.0
Lactobacillus reuteri JCM 1112 probiotic NC_010609.1 38.9 2.0
Listeria monocytogenes FSL J1-208 pathogenic ASM16843v1 37.7 2.0
Lactobacillus salivarius UCC118 probiotic NC_007929.1 33 2.1
Lactobacillus helveticus DPC 4571 probiotic NC_010080.1 37.1 2.1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 probiotic NC_008531.1 37.7 2.1
Campylobacter concisus 13826 pathogenic NC_009802.1 39.3 2.1
Lactobacillus fermentum IFO 3956 probiotic NC_010610.1 51.5 2.1
Bifidobacterium adolescentis ATCC 15703 probiotic NC_008618.1 59.2 2.1
Bifidobacterium bifidum PRL2010 probiotic NC_014638.1 Na 2.2
Bifidobacterium bifidum S17 probiotic NC_014616.1 Na 2.2
Lactobacillus amylovorus GRL 1112 probiotic NC_014724.1 Na 2.2
Lactobacillus brevis ATCC 367 probiotic NC_008497.1 46.1 2.3
Lactobacillus crispatus CTV-05 probiotic ASM16588v1 37.1 2.3
Bifidobacterium longum NCC2705 probiotic NC_004307.2 60.1 2.3
Bifidobacterium longum subsp. longum BBMN68 probiotic NC_014656.1 Na 2.3
Bifidobacterium longum subsp. infantis 157F probiotic NC_015052.1 Na 2.4
Bifidobacterium longum subsp. longum JCM 1217 probiotic NC_015067.1 Na 2.4
Lactococcus lactis subsp. lactis Il1403 probiotic NC_002662.1 35.3 2.4
Bifidobacterium longum DJO10A probiotic NC_010816.1 60.2 2.4
Bifidobacterium longum subsp. longum JDM301 probiotic NC_014169.1 Na 2.5
Lactococcus lactis subsp. cremoris MG1363 probiotic NC_009004.1 35.7 2.5
Listeria grayi DSM 20601 pathogenic ASM14899v1* 41.6 2.6
Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 probiotic NC_014215.1 Na 2.6
Lactococcus lactis subsp. lactis KF147 probiotic NC_013656.1 34.9 2.6
Lactococcus lactis subsp. cremoris SK11 probiotic NC_008527.1 35.8 2.6
Bifidobacterium dentium Bd1 probiotic NC_013714.1 58.5 2.6
Bifidobacterium longum subsp. infantis ATCC 15697 probiotic NC_011593.1 59.9 2.8
Listeria monocytogenes EGD-e pathogenic NC_003210.1 38 2.9
Lactobacillus casei str. Zhang probiotic NC_014334.1 40.1 2.9
Lactobacillus casei ATCC 334 probiotic NC_008526.1 46.6 2.9
Lactobacillus paracasei subsp. paracasei ATCC 25302 probiotic ASM15949v1 46.5 2.9
Lactobacillus rhamnosus GG probiotic NC_013198.1 46.7 3.0
Lactobacillus rhamnosus Lc 705 probiotic NC_013199.1 46.7 3.0
Lactobacillus casei BL23 probiotic NC_010999.1 46.3 3.1
Lactobacillus plantarum JDM1 probiotic NC_012984.1 44.7 3.2
Enterococcus faecalis V583 probiotic NC_004668.1 37.4 3.3
Lactobacillus plantarum WCFS1 probiotic NC_004567.1 44.4 3.3
Lactobacillus plantarum subsp. plantarum ST-III probiotic NC_014554.1 Na 3.4
Bacillus selenitireducens MLS10 Bio agent ASM9308v1 48.7 3.6
Bacillus pumilus SAFR-032 probiotic NC_009848.1 41.3 3.7
Coprobacillus sp. 29_1 Non-pathogenic Coprobacillus_sp_29_1_V1 NA 3.8
Vibrio cholerae M66-2 pathogenic NC_012578.1 47.6 3.9
Bacillus halodurans C-125 Non-pathogenic ASM1114v1 43.7 4.2
Bacillus amyloliquefaciens Y2 probiotic ASM28439v1 45.9 4.2
Clostridium difficile 630 pathogenic NC_009089.1 29.1 4.3
Bacillus clausii KSM-K16 probiotic NC_006582.1 44.8 4.3
Shigella dysenteriae Sd197 pathogenic ASM1200v1] 50.9 4.6
Shigella flexneri 8401 pathogenic NC_008258.1 50.9 4.6
Salmonella enterica subsp. arizonae serovar RSK2980 pathogenic NC_010067.1 51.4 4.6
Enterobacter sp. 638 pathogenic NC_009436.1 52.9 4.7
Vibrio vulnificus CMCP6 pathogenic NC_004459.2 46.7 5.1
Escherichia coli E24377A pathogenic NC_009801.1 50.6 5.2
Citrobacter rodentium ICC168 pathogenic NC_013716.1 54.6 5.4
Klebsiella variicola At-22 pathogenic NC_013850.1 57.6 5.5
Bacillus megaterium QM B1551 probiotic ASM2582v1 38.0 5.5
Escherichia coli O157:H7 Sakai pathogenic NC_002695.1 50.5 5.6
Bacillus thuringiensis serovar israelensis ATCC 35646 Bio agents ASM16769v1 35.0 5.9
Lachnospiraceae bacterium 3_1_57FAA_CT1 Non-pathogenic Lach_bact_3_1_57FAA_CT1_V1 NA 7.7
  1. *: assembly accession.
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Cell & Bioscience

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