Gene | Cancer | Discovery Cohort | Validation Cohort | Combined | |||
---|---|---|---|---|---|---|---|
OR (95% CI) | P-value | OR (95% CI) | P-value | OR (95% CI) | P-value | ||
ABCC8 + KCNJ11 | Anal Carcinoma | 2.749 × 10− 4 (1.18 × 10− 6, 0.064) | 0.003 | 4.370 × 10− 6 (1.700 × 10− 10, 0.112) | 0.017 | 1.000 × 10− 4 (0.0001, 0.013) | 0.0002 |
 | Cardia Cancer | 4.217 (0.007, 2.46 × 103) | 0.658 | 0.518 (0.091, 2.952) | 0.459 | 0.600 (0.112, 3.211) | 0.550 |
 | Gastric Cancer | 0.107 (0.001, 22.430) | 0.412 | 0.884 (0.364, 2.147) | 0.786 | 0.835 (0.348, 2.005) | 0.687 |
 | Hepatocellular Carcinoma | 0.009 (1.01 × 10− 4, 0.852) | 0.042 | 0.001 (8.782 × 10− 5, 0.026) | 7.058 × 10− 6 | 0.003 (2.000 × 10− 4, 0.028) | < 0.0001 |
 | Intrahepatic Cholangiocarcinoma | 440.752 (1.751, 1.11 × 105) | 0.031 | 56.759 (6.941, 464.115) | 1.651 × 10− 4 | 73.520 (10.312, 524.150) | < 0.0001 |
 | Pancreatic Cancer | 8.440 (1.633, 43.635) | 0.010 | 56.728 (4.720, 681.753) | 0.001 | 15.058 (3.824, 59.295) | 0.0001 |
 | Rectum Cancer | 3.805 (0.871, 16.620) | 0.076 | 0.280 (0.073, 1.068) | 0.062 | 0.911 (0.338, 2.457) | 0.855 |
DPP4 | Anal Carcinoma | 4.453 × 10− 6 (2.04 × 10− 8, 0.001) | 7.325 × 10− 6 | 0.447 (0.020, 0.910) | 0.005 | 0.123 (0.020, 0.745) | 0.023 |
 | Cardia Cancer | 0.152 (0.004, 6.255) | 0.321 | 5.092 (0.669, 38.723) | 0.402 | 2.275 (0.383, 13.501) | 0.366 |
 | Gastric Cancer | 0.192 (0.003, 13.660) | 0.449 | 1.251 (0.430, 3.645) | 0.681 | 1.120 (0.397, 3.160) | 0.830 |
 | Hepatocellular Carcinoma | 19.221 (1.47 × 10− 4, 2.51 × 106) | 0.623 | 3.455 (0.312, 382.858) | 0.389 | 3.988 (0.133, 120.054) | 0.426 |
 | Intrahepatic Cholangiocarcinoma | 7.993 × 103 (51.330, 1.25 × 106) | 4.846 × 10− 4 | 3.991 (0.839, 18.977) | 0.082 | 7.733 (1.743, 34.310) | 0.007 |
 | Pancreatic Cancer | 0.315 (0.074, 1.334) | 0.117 | 0.455 (0.053, 3.904) | 0.472 | 0.353 (0.106, 1.170) | 0.089 |
 | Rectum Cancer | 2.685 (0.110, 65.590) | 0.545 | 8.268 (0.278, 246.197) | 0.148 | 4.555 (0.445, 46.650) | 0.202 |
ETFDH | Anal Carcinoma | 0.004 (2.47 × 10− 14, 6.53 × 108) | 0.675 | 0.684 (0.025, 190.226) | 0.990 | 0.589 (0.007, 48.429) | 0.814 |
 | Cardia Cancer | 3.149 × 10− 4 (6.35 × 10− 11, 1.56 × 103) | 0.305 | 1.228 (0.129, 11.711) | 0.953 | 1.032 (0.111, 9.616) | 0.978 |
 | Gastric Cancer | 1.578 (3.17 × 10− 8, 7.86 × 107) | 0.96 | 0.666 (0.022, 20.340) | 0.816 | 0.687 (0.024, 19.720) | 0.826 |
 | Hepatocellular Carcinoma | 3.949 (1.34 × 10− 9, 1.16 × 1010) | 0.902 | 4.262 (0.037, 485.767) | 0.345 | 4.248 (0.042, 434.573) | 0.540 |
 | Intrahepatic Cholangiocarcinoma | 0.070 (5.75 × 10− 11, 8.57 × 107) | 0.803 | 0.490 (0.000, 611.716) | 0.845 | 0.401 (0.001, 341.417) | 0.790 |
 | Pancreatic Cancer | 8.505 (0.025, 2.95 × 103) | 0.473 | 6.546 (0.142, 302.443) | 0.132 | 7.082 (0.287, 174.724) | 0.231 |
 | Rectum Cancer | 3.248 (0.012, 8.59 × 102) | 0.679 | 0.083 (0.001, 9.994) | 0.309 | 0.394 (0.010, 14.895) | 0.615 |
GLP1R | Anal Carcinoma | 1.044 × 104 (9.548, 1.14 × 107) | 0.010 | 9.431 (0.194, 458.377) | 0.150 | 49.160 (1.648, 1.466 × 103) | 0.025 |
 | Cardia Cancer | 3.094 × 102 (3.695, 2.59 × 104) | 0.011 | 17.191 (3.092, 95.583) | 0.536 | 25.073 (5.064, 124.149) | < 0.0001 |
 | Gastric Cancer | 19.724 (0.189, 2.06 × 103) | 0.209 | 0.553 (0.293, 1.043) | 0.067 | 1.526 (0.065, 35.899) | 0.793 |
 | Hepatocellular Carcinoma | 0.046 (5.91 × 10− 4, 3.645) | 0.168 | 2.666 (0.205, 34.673) | 0.454 | 0.942 (0.103, 8.597) | 0.958 |
 | Intrahepatic Cholangiocarcinoma | 63.028 (0.261, 1.52 × 104) | 0.139 | 0.975 (0.187, 5.091) | 0.976 | 1.379 (0.283, 6.714) | 0.690 |
 | Pancreatic Cancer | 1.085 (0.274, 4.292) | 0.907 | 7.414 (0.732, 75.066) | 0.090 | 1.792 (0.549, 5.846) | 0.334 |
 | Rectum Cancer | 4.290 (0.795, 23.160) | 0.091 | 1.136 (0.302, 4.273) | 0.851 | 1.886 (0.665, 5.346) | 0.233 |
GPD2 | Anal Carcinoma | 2.365 × 103 (1.74 × 10− 10, 3.22 × 1016) | 0.615 | 14.585 (0.004, 500.561) | 0.380 | 17.511 (0.057, 5.406 × 103) | 0.328 |
 | Cardia Cancer | 0.509 (2.28 × 10− 7, 1.14 × 106) | 0.928 | 4.010 (0.516, 313.133) | 0.078 | 3.648 (0.160, 83.440) | 0.418 |
 | Gastric Cancer | 2.869 × 103 (1.32 × 10− 4, 6.25 × 1010) | 0.356 | 1.267 (0.040, 40.233) | 0.893 | 1.729 (0.058, 51.164) | 0.752 |
 | Hepatocellular Carcinoma | 2.161 (3.09 × 10− 7, 1.51 × 107) | 0.924 | 0.009 (7.779 × 10− 8, 1.132 × 103) | 0.434 | 0.065 (0.0001, 779.411) | 0.568 |
 | Intrahepatic Cholangiocarcinoma | 3.333 × 104 (6.74 × 10− 5, 1.65 × 1013) | 0.308 | 0.002 (7.750 × 10− 8, 76.031) | 0.254 | 0.078 (0.0001, 766.568) | 0.586 |
 | Pancreatic Cancer | 8.064 (0.024, 2.71 × 103) | 0.482 | 12.495 (0.003, 4.623 × 104) | 0.547 | 9.334 (0.081, 1.076 × 103) | 0.357 |
 | Rectum Cancer | 0.004 (1.83 × 10− 5, 0.728) | 0.038 | 0.062 (0.003, 1.277) | 0.086 | 0.031 (0.002, 0.428) | 0.010 |
INSR | Anal Carcinoma | 1.095 × 103 (0.001, 1.99 × 109) | 0.341 | 0.381 (0.008, 173.995) | 0.885 | 0.889 (0.008, 97.817) | 0.961 |
 | Cardia Cancer | 5.233 × 103 (0.032, 8.60 × 108) | 0.162 | 9.896 (0.103, 94.798) | 0.058 | 15.804 (0.594, 420.471) | 0.099 |
 | Gastric Cancer | 0.031 (3.35 × 10− 8, 2.96 × 104) | 0.622 | 2.047 (0.139, 30.057) | 0.601 | 1.756 (0.126, 24.528) | 0.676 |
 | Hepatocellular Carcinoma | 0.050 (4.49 × 10− 7, 5.49 × 103) | 0.612 | 0.067 (2.086 × 10− 4, 21.519) | 0.359 | 0.063 (4.000 × 10− 4, 11.094) | 0.295 |
 | Intrahepatic Cholangiocarcinoma | 0.001 (4.81 × 10− 10, 2.41 × 103) | 0.360 | 0.036 (0.001, 1.513) | 0.081 | 0.029 (0.001, 1.086) | 0.056 |
 | Pancreatic Cancer | 0.397 (0.007, 21.720) | 0.651 | 11.007 (0.023, 5.234 × 103) | 0.446 | 1.063 (0.037, 30.495) | 0.972 |
 | Rectum Cancer | 0.669 (0.014, 33.000) | 0.840 | 0.428 (0.032, 5.811) | 0.524 | 0.492 (0.056, 4.292) | 0.521 |
PPARG | Anal Carcinoma | 42.852 (6.09, 301.523) | 1.601 × 10− 4 | 3.757 (0.519, 27.180) | 0.190 | 12.909 (3.217, 51.795) | 0.0003 |
 | Cardia Cancer | 1.440 (0.29, 7.151) | 0.656 | 11.018 (5.995, 202.492) | 0.109 | 3.851 (0.525, 28.257) | 0.185 |
 | Gastric Cancer | 0.063 (0.012, 0.339) | 0.001 | 0.758 (0.545, 1.055) | 0.101 | 0.691 (0.500, 0.956) | 0.026 |
 | Hepatocellular Carcinoma | 63.807 (13.260, 306.900) | 2.152 × 10− 7 | 3.644 (0.150, 88.367) | 0.026 | 36.507 (8.929, 149.259) | < 0.0001 |
 | Intrahepatic Cholangiocarcinoma | 8.980 (1.241, 64.975) | 0.030 | 5.238 (2.699, 12.193) | 0.046 | 5.609 (2.772, 11.347) | < 0.0001 |
 | Pancreatic Cancer | 0.290 (0.171, 0.492) | 4.549 × 10− 6 | 0.010 (0.004, 0.023) | 2.371 × 10− 27 | 0.110 (0.071, 0.172) | < 0.0001 |
 | Rectum Cancer | 2.031 (0.616, 6.690) | 0.244 | 1.470 (0.974, 22.190) | 0.066 | 1.803 (0.699, 4.654) | 0.223 |
PRKAB1 | Anal Carcinoma | 0.035 (4.917 × 10− 4, 2.539) | 0.125 | 0.608 (7.671 × 10− 6, 482.378) | 0.090 | 0.059 (0.001, 2.814) | 0.151 |
 | Cardia Cancer | 20.741 (0.854, 503.700) | 0.062 | 3.209 (0.805, 1.279 × 103) | 0.098 | 9.325 (0.836, 104.023) | 0.070 |
 | Gastric Cancer | 0.285 (0.007, 11.250) | 0.503 | 1.032 (0.551, 1.933) | 0.922 | 0.995 (0.536, 1.847) | 0.987 |
 | Hepatocellular Carcinoma | 0.097 (0.003, 3.010) | 0.183 | 6.206 (0.541, 71.205) | 0.143 | 1.541 (0.211, 11.276) | 0.670 |
 | Intrahepatic Cholangiocarcinoma | 544.800 (7.099, 4.18 × 104) | 4.441 × 10− 3 | 11.327 (0.369, 477.766) | 0.067 | 54.449 (3.434, 863.226) | 0.005 |
 | Pancreatic Cancer | 0.599 (0.133, 2.703) | 0.505 | 0.157 (0.025, 0.975) | 0.069 | 0.348 (0.109, 1.114) | 0.075 |
 | Rectum Cancer | 2.403 (0.757, 7.626) | 0.137 | 3.529 (0.110, 112.742) | 0.333 | 2.497 (0.835, 7.470) | 0.102 |
SLC5A2 | Anal Carcinoma | 0.153 (0.004, 6.058) | 0.317 | 0.370 (0.009, 15.078) | 0.599 | 0.237 (0.017, 3.230) | 0.280 |
 | Cardia Cancer | 43.268 (2.771, 675.700) | 0.007 | 11.038 (3.381, 36.036) | 6.951 × 10− 5 | 13.666 (4.610, 40.515) | < 0.0001 |
 | Gastric Cancer | 0.652 (0.016, 26.550) | 0.821 | 29.569 (11.585, 551.493) | 0.065 | 6.183 (0.156, 244.359) | 0.332 |
 | Hepatocellular Carcinoma | 100.541 (2.926, 3.455 × 103) | 0.011 | 22.507 (4.289, 118.097) | 0.092 | 29.465 (6.568, 132.195) | < 0.0001 |
 | Intrahepatic Cholangiocarcinoma | 46.219 (0.439, 4.868 × 103) | 0.107 | 1.165 (0.400, 3.393) | 0.780 | 1.401 (0.494, 3.971) | 0.527 |
 | Pancreatic Cancer | 6.650 (2.529, 17.486) | 1.227 × 10− 4 | 15.351 (2.686, 87.744) | 0.002 | 8.096 (3.476, 18.857) | < 0.0001 |
 | Rectum Cancer | 1.284 (0.432, 3.814) | 0.652 | 1.109 (0.525, 2.341) | 0.786 | 1.162 (0.628, 2.152) | 0.633 |