In vivo microRNA-155 expression influences antigen-specific T cell-mediated immune responses generated by DNA vaccination
© Mao et al; licensee BioMed Central Ltd. 2011
Received: 24 November 2010
Accepted: 18 January 2011
Published: 18 January 2011
MicroRNA (miRNA) molecules are potent mediators of post-transcriptional gene silencing that are emerging to be critical in the regulation of innate and adaptive immunity.
Here we report that miR-155--an oncogenic miRNA with important function in the mammalian immune system--is induced in dendritic cells (DCs) upon maturation and potentially attenuates their ability to activate T cells. Biolistic epidermal transfection with DNA encoding miR-155 suppressed the induction of antigen-specific T cell-mediated immunity, whereas reduction of endogenous miR-155 by a partially complementary antisense sequence reversed this effect. Because DCs represent a significant component of epidermal tissue and are among the most potent of antigen-presenting cells, the inhibitory actions of miR-155 could be mediated through this subset of cells.
These results suggest that miR-155 may repress the expression of key molecules involved in lymph node migration, antigen presentation, or T cell activation in DCs, and thus forms part of a negative regulatory pathway that dampens the generation of T cell-mediated immune responses. Modulation of miR-155 expression in epidermis therefore represents a potentially promising form of gene therapy for the control of diseases ranging from autoimmunity to cancer and viral infection.
The mammalian immune system exists in a state of dynamic equilibrium, in which aggressive responses to foreign pathogens are curtailed by intrinsic feedback mechanisms that confer tolerance to self tissue. The genes that maintain this equilibrium are exquisitely regulated at the transcriptional level by intricate molecular pathways that have gradually become revealed over the past few years. However, the post-transcriptional control of these genes remains to be understood.
Recently, it was discovered that multiple aspects of cellular function are influenced by microRNA (miRNA), a diverse class of small (~22 nucleotide) and copious RNA species that efficiently 'knocks down' a vast array of genes at the post-transcriptional stage . Collectively, these molecules are predicted to modulate the expression of many human genes. miRNA is initially produced as a ~60 nucleotide precursor with a defined stem-loop structure. Following nuclear export, it is processed by the enzyme Dicer into a ~22 nucleotide duplex, and a single strand is then preferentially incorporated into the RNA-induced silencing complex (RISC). The miRNA-RISC binds to partially complementary sites in the 5' or 3' untranslated regions (UTR) of target mRNA molecules, where it induces either translational repression or mRNA degradation.
Several recent reports have demonstrated that miRNAs exert profound effects on the development and function of innate and adaptive immunity (for review, see). Recent studies have shown that miRNAs can control maturation, function, and maintenance of dendritic cells[3–5]. Based on these findings, we were interested in whether miRNA expression in dendritic cells (DCs), highly potent professional antigen-presenting cells, impacts their ability to activate naïve T cells. We chose to study a recently discovered miRNA, miR-155--which is encoded by exon 3 of the bic gene--since evidence suggests that it is intimately involved in regulation of multiple arms of the immune system [6, 7]. Rodriguez et al. demonstrated that transgenic mice carrying an inactivating mutation in bic were unable to protect against challenge with Salmonella typhimurium despite pre-vaccination with a nonvirulent strain of these bacteria . Further analysis revealed that these bic-deficient (bic m/m ) mice had reduced numbers of IgM class-switched antigen-specific antibodies, and interferon (IFN)-γ and interleukin (IL)-2 secretion by activated T cells was impaired, indicating that miR-155 is broadly indispensable for normal immunological function . By contrast, a recent study has reported that miR-155 attenuates the inflammatory pathway induced by IL-1 in vitro. Thus, the function of miR-155 in the physiologic setting, and specifically whether it acts to propagate or suppress the adaptive immune response, is presently unclear. We hypothesized that--due to the pleiotropic effects of miR-155 on the immune system established in previous studies--its expression in DCs may modulate the strength of T cell priming. In this context, we sought to clarify the in vivo role of miR-155 in influencing DC-mediated T cell activation.
Here we show that miR-155 is induced in murine bone marrow-derived DCs (BMDCs) upon stimulation with the Toll-like receptor (TLR) 4 ligand lipopolysaccharide (LPS), and that its expression attenuates T cell activation in vivo. Conversely, reduction of endogenous miR-155 levels with a partially complementary antisense sequence augmented the induction of antigen-specific T cells. Our data suggest that miR-155 expression in activated DCs may be involved in the repression of genes required for antigen presentation or T cell stimulation. Thus, miR-155 may constitute part of a negative regulatory system that evolved to temper the magnitude of the adaptive immune response and protect against the onset of autoimmune pathologies.
DCs express detectable levels of endogenous miR-155
A DNA vector that encodes miR-155, bic 155 , efficiently silences expression of a reporter construct that contains an miR-155 complementary sequence
DC-1 cells were cotransfected with GFP/miR-155as and either bic 155 or a control construct encoding non-specific miRNA. The cells were visualized by fluorescence microscopy 24 hrs after transfection. As shown in Figure 2B, cotransfection with bic 155 (panel II) compared to control (panel I) strongly reduced GFP expression from the GFP/miR-155as vector. There was no noticeable difference in cellular viability or proliferation between these groups, and transfection efficiency appeared uniform as assessed by flow cytometry (data not shown). Thus, bic 155 represents a DNA vector that efficiently produces functional miR-155 in mammalian DCs. Furthermore, as evident in panels III and IV, transfection with bic 155 does not alter GFP expression from a reporter construct in which the miR-155 target sequence is abolished (GFP/control), confirming the specificity of our construct.
To determine the extent to which the endogenous miR-155 in DC-1 cells may have contributed to the observed knockdown effect, we compared the fluorescence intensity in cells transfected with small amounts of either GFP/control or GFP/miR-155as. It was found that GFP expression was not significantly, reduced in cells transfected with GFP/miR-155as (panel V) relative to GFP/control (panel III). Altogether these data indicate that introduction of bic 155 in our in vitro system dramatically increases the expression of functional miR-155 over basal levels.
Coadministration of CRT/E7 DNA vaccine with bic 155 attenuates E7-specific T cell-mediated immune responses in vaccinated mice
Next we aimed to determine whether bic 155 expression in DCs has functional significance and can influence the activation of antigen-specific T cells in vivo. It has been shown that epidermal DCs in mice can be efficiently transfected by intradermal DNA administration using the gene gun, a biolistic particle delivery system . These transfected DCs are activated by the pressure from bombardment and undergo migration to peripheral lymphoid organs. In fact, they have been found to constitute approximately 0.2% of CD11c+ cells in the inguinal lymph nodes and persist there for at least 5 days . Our laboratory has previously developed a chimeric DNA vaccine encoding the molecular chaperone calreticulin linked to the E7 oncoprotein of human papillomavirus type-16 (CRT/E7) and demonstrated that vaccination with CRT/E7 can elicit potent CD8+ T cell-mediated immunity against E7 . We thus utilized this vaccination system to generate antigen-specific T cells in vivo, and investigated how the magnitude of these responses might be modulated when bic 155 is coadministered with CRT/E7 into mice by gene gun.
A DNA vector that encodes an antisense RNA sequence partially complementary to miR-155, I 155 , rescues the expression of GFP in DCs cotransfected with Bic 155 and GFP/miR-155as
We reasoned that, if miR-155 expression in DCs indeed negatively regulates T cell activation, then reducing endogenous levels of this miRNA should have the opposite effect. To further explore this possibility, we generated a DNA vector that encodes an antisense RNA sequence partially complementary to miR-155 and examined whether it would, as predicted, exhibit a potentiating effect on T cell activation when coadministered with CRT/E7.
We sought to determine whether the expression of I 155 can inhibit the activity of miR-155 in transfected DC-1 cells. As shown in Figure 2B, transfection of DC-1 cells with GFP/miR-155as generated a strong green fluorescent signal in these cells, which was markedly diminished by introduction of bic 155 . In theory, if expression of I 155 leads to the knockdown of miR-155, then treatment of cells with I 155 should rescue GFP expression in cells cotransfected with GFP/miR-155as and bic 155 .
DC-1 cells were transfected with GFP/miR-155as alone or in combination with either bic 155 or both bic 155 and I 155 . Cells were imaged by fluorescence microscopy 24 hrs after transfection. As illustrated in Figure 4B, green fluorescence was observed in cells cotransfected with GFP/miR-155as and a control construct encoding non-specific miRNA (panel I), whereas it was virtually undetectable in cells also cotransfected with GFP/miR-155as and bic 155 (panel II), confirming previous observations that bic 155 exerts a dramatic knockdown effect on miR-155 target gene expression (see Figure 2B). Further, we observed that transfection of DC-1 cells with I 155 together with GFP/miR-155as and bic 155 restored the expression of GFP (panel IV). The transfection efficiency of I 155 in DC-1 cells was demonstrated by the expression of RFP (panel III). There was no noticeable difference in cellular viability or proliferation between all these groups, and transfection efficiency appeared uniform as assessed by flow cytometry (data not shown). Therefore, our data suggest that I 155 acts as a highly efficient inhibitor of miR-155.
Because the I 155 construct contains 6 tandemly repeated sites partially complementary to miR-155, it is conceivable that--in addition to its role as an inhibitor--it could also serve as a target for endogenous miR-155, and its expression could be suppressed at the post-transcriptional level. To test this possibility, we compared red fluorescence intensity in DCs transfected with a small amount of either I 155 or an RFP vector with the miR-155 antisense sequences abolished (RFP/control). As shown in Figure 4B, cells transfected with I 155 (panel VI), relative to RFP/control (panel V), displayed substantially decreased RFP expression, although this difference in expression could be due to variation in the nature of the DNA constructs. There was no observable difference in confluence or transfection efficiency between the groups. Thus, we have demonstrated that I 155 potently attenuates the expression and function of miR-155 in DCs and itself serves as a target of the endogenous form of this miRNA.
Coadministration of I 155 with CRT/E7 DNA enhances E7-specific CD8+ T cell-mediated immune responses in vaccinated mice
In the current study, we have provided data to demonstrate that miR-155 is induced in DCs upon maturation and that its expression in vivo negatively regulates the induction of antigen-specific T cells. Administration of bic 155 , a miR-155 expression vector, to epidermal DCs in vivo suppressed the generation of T cell-mediated immunity. This outcome was reversed by decreasing endogenous miR-155 levels in DCs with a partially antisense inhibitor, I 155 . These results altogether suggest that miR-155 has an inhibitory effect on DC-mediated T cell activation. In addition, our data also suggest that miRNA levels in DCs may be manipulated to modulate the activation of antigen-specific T cell-mediated immunity for therapeutic purposes.
Our findings reveal a new way in which miRNAs may exert control over the immune system. The role of miRNAs as key regulators of the innate and adaptive immune systems is becoming increasingly evident. Indeed, miRNAs have recently been implicated in a wide variety of immunological processes, including hematopoietic cell differentiation, lymphocyte development and function [6, 7, 15–17], as well as protective responses against bacterial  or viral  pathogens. The current study identifies a novel role of miRNA in the regulation of DC-mediated antigen-specific T cell priming.
In general, the expression of miRNAs is precisely controlled at the transcriptional level, enabling them to finely adjust cellular behavior as necessary. miR-155 production is believed to be transiently under the control of nuclear factor (NF)-κB and can be strongly induced during inflammation [18, 20, 21]. Recently, miR-155 has also been shown to play a role in the promotion of T cell-dependent tissue inflammation. It has been shown that basal miR-155 levels in murine macrophages are virtually undetectable but increase dramatically by 6 hrs after treatment with the TLR ligands polyriboinosinic:polyribocytidylic acid (poly(I:C)), LPS, CpG, and P3C, as well as the cytokines IFN-β and IFN-γ, in a c-Jun N-terminal kinase-dependent manner [18, 20]. We have demonstrated that this phenomenon is conserved in DCs, as stimulation of these cells with LPS strongly induced miR-155. Collectively, our findings suggest that miR-155 expression may be a global consequence of inflammation, although the precise role it plays in this process may vary depending on cell type.
It has been demonstrated that miR-155 is critical for the generation of robust T cell-mediated immunity in mice, partly through the action of this miRNA in DCs . In this context, we were surprised to find that coadministration of DNA encoding miR-155 with CRT/E7 led to a decrease in E7-specific CD8+ T cell-mediated immune responses in vivo. These results suggested to us that miR-155 may have a complicated function in DCs, in which its influence on T cell stimulatory capacity could vary depending on its expression level or the developmental stage of the cell. Alternatively, because our biolistic delivery method transfects a wide variety of epidermal cells in addition to DCs, it is conceivable that the phenomenon we observed is due to the effects of miR-155 on these other types of cells. We reasoned that if overexpression of miR-155 in DCs diminished antigen-specific T cell responses, then suppression of this miRNA should correspondingly augment these responses. Biolistic delivery to epidermal DCs of an efficient miR-155 repressor, I 155 , significantly amplified the number of IFN-γ-secreting E7-specific CD8+ T cells generated by the CRT/E7 vaccine. Therefore, manipulation of endogenous miR-155 levels in DCs alters the intensity of DC-induced T cell-mediated immunity in vivo in a systematic manner, consistent with the proposed immunosuppressive activity of this miRNA.
Several reported studies may support the observed function of miR-155 as an attenuator of the adaptive immune system and provide clues about the molecular mechanisms through which this miRNA exerts its effects. It was recently shown that the NF-κB signaling pathway may be repressed by miR-155 through the silencing of inhibitor of NF-κB (IκB) kinase (IKK) ε . In response to TLR signaling, the IKK family of proteins phosphorylates IκB, thereby enabling NF-κB to translocate into the nucleus and initiate transcription. IKKε has also been demonstrated to facilitate NF-κB nuclear import by phosphorylating its c-Rel subunit . In addition, IKKβ as well as a variety of other central immunological molecules--such as Fas-associated death domain protein (FADD) and receptor (TNFRSF)-interacting serine-threonine kinase 1 (Ripk1)--likely represent major direct targets of miR-155 . FADD is an adaptor molecule that is crucial for the development of normal immune responses [25, 26], and Ripk1 mediates tumor necrosis factor-induced activation of NF-κB . Therefore, since the maturation and T cell stimulatory capacity of DCs depends vitally on signaling through the NF-κB pathway, miR-155 could exert its inhibitory effects by suppressing this pathway on multiple levels. Furthermore, a recent study has reported that miR-155 produced by human monocyte-derived DCs attenuates the TLR/IL-1 pathway and silences transforming growth factor-β activated kinase 1 binding protein (TAB2), an important intermediate in the IL-1 cascade . This in vitro evidence directly supports our results which suggest that miR-155 expression in DCs is part of a negative feedback loop that suppresses the inflammatory response. While we believe, on the basis of its likely molecular targets, that miR-155 influences DC biology primarily at the level of antigen presentation and processing or costimulation, we cannot exclude the possibility that the in vivo effects we observed in this study were at least partially due to other factors, such as the potential ability of miR-155 to impair cellular migration to the peripheral lymphoid organs. These alternative mechanisms present an important area for future investigation.
On the basis of our current data and the work of others, it is intriguing to speculate about the purpose of miR-155 activity in DCs. We propose a dose-dependent paradigm in which a threshold miR-155 expression level must be maintained in DCs in order to generate effective T cell-mediated immunity against foreign pathogens. However, when environmental stimuli cause the concentration of cellular miR-155 to escalate beyond this basal level, miR-155 becomes sufficiently abundant to repress the translation of molecules involved in antigen presentation or T cell activation, and thus may form part of a negative regulatory pathway that restrains the magnitude of the adaptive immune response and perhaps evolved to protect against the onset of autoimmune pathologies.
The current study mainly focuses on an immature DC line, DC-1. It will be important to also consider performing experiments to interfere with miR-155 levels during different maturation stages of monocyte-derived DCs (moDCs) for a more comprehensive understanding of the effect of miR-155 on the biological function of moDCs . However, the potential limitations for such an experimental approach is the overexpression of miRNAs to non-physiological levels that may lead to altered target genes. Thus it is important to consider the expression levels of miRNAs in moDCs for gain- or loss-of-function studies to illustrate the influence of miR-155 on moDCs.
Finally, this study provides an impetus and framework for the development of miRNA-based therapeutics. To our knowledge, this is the first report of in vivo miRNA delivery for the modulation of adaptive immunity. We have demonstrated the general principle that miRNAs or their inhibitors can be biolistically administered into epidermal DCs to systematically manipulate T cell-mediated immune responses. It is exciting to envision the possibility that, in the near future, these small yet powerful RNA species may be incorporated into medicines for autoimmune disorders or into vaccines for cancers and viral infections.
Taken together, our results suggest that miR-155 may repress the expression of key molecules involved in lymph node migration, antigen presentation, or T cell activation in DCs, and thus forms part of a negative regulatory pathway that dampens the generation of T cell-mediated immune responses. Modulation of miR-155 expression in DCs therefore represents a potentially promising form of gene therapy for the control of diseases ranging from autoimmunity to cancer and viral infections.
Preparation of BMDCs
Bone marrow cells were flushed from tibiae and femurs of C57BL/6 mice. After lysis of erythrocytes, cells were washed twice and resuspended at 1 × 106 cells/ml in RPMI-1640 medium supplemented with 2 mM glutamine, 1 mM sodium pyruvate, 100 μM nonessential amino acids, 5 × 10-5 M β-mercaptoethanol, 100 IU/ml penicillin, 100 μg/ml streptomycin, 5% fetal bovine serum, and 20 ng/ml recombinant murine GM-CSF (PeproTech, Rock Hill, NJ). Cells were cultured in 24-well plates at 37°C in a humidified incubator with 5% CO2. On days 2 and 4, cells were replenished with fresh medium supplemented with 20 ng/ml GM-CSF. On day 6, cells were either pulsed with LPS for 5 hrs or left untreated and then harvested for RNA isolation and RT-PCR.
miRNA isolation and detection
Total RNA was purified from 1 × 107 BMDCs by acid-phenol:chloroform extraction using the mir Vana miRNA Isolation Kit (Ambion, Austin, TX). The resultant sample was enriched for small RNA species by ethanol precipitation according to the manufacturer's instructions. Endpoint RT-PCR was then performed with primers directed against either mature miR-155 or the housekeeping gene GAPDH using the mir Vana qRT-PCR miRNA Detection Kit (Ambion). In order to facilitate the PCR, the miR-155 RT primer was designed to introduce a flanking sequence which extends beyond the 5' region of the mature form of this miRNA. Therefore, the final amplified product is about 90 base pairs. As a positive control, we used DC-1 cells, which are derived from an immortalized DC line  kindly provided by Dr. Kenneth Rock (University of Massachusetts, Worcester, MA) and constitutively produce miR-155. As a negative control, we used the human embryonic kidney cell line 293. Tissue from kidney has previously been shown to lack miR-155 .
Plasmid expression vectors
For the generation of bic 155 , nucleotides 134-283 from exon 3 of the bic gene were synthesized (GeneArt, Regensburg, Germany) with flanking XbaI and EcoRI restriction sites and cloned into the pcDNA3.1(-) mammalian expression vector (Invitrogen, Carlsbad, CA). GFP/miR-155as was created by ligating an oligonucleotide (5'-CCCCTATCACAATTAGCATTAA-3') perfectly antisense to mature miR-155 into the BamHI/HindIII sites of the pcDNA3.GFP plasmid . A miRNA control DNA construct was generated in which a non-specific miRNA was cloned into the pcDNA3 plasmid. This control construct is not expected to hybridize with miR-155 target sites. GFP/control represents the GFP/miR-155as construct with the miR-155 binding site deleted. For the production of I 155 , 6 tandemly repeated DNA fragments of imperfect complementarity (5'-CCCCTATCACGAAAGCATTAA-3') to mature miR-155 were synthesized with 4 guanine nucleotide spacers in between each one. These sequences were then inserted into the 3' UTR (at BamHI/HindIII sites) of pcDNA3.RFP. RFP/control represents the I 155 construct with the miR-155 antisense region deleted. The design of the CRT/E7 construct has been reported previously . Plasmids were confirmed by DNA sequencing.
Cell culture and DNA transfection
By continuous passage we generated a subclone (DC-1) of an immortalized DC line, that is readily transfectable with Lipofectamine 2000 (Invitrogen). DC-1 cells were cultured in RPMI-1640 (Sigma-Aldrich, St. Louis, MO) at 37°C in a humidified incubator with 5% CO2. 5 × 105 cells/well were seeded in 6-well plates, and transfections were performed using Lipofectamine 2000 (Invitrogen) with combinations of GFP/miR-155as, bic 155 , and I 155 in a 1:9:10 mass ratio. Empty pcDNA3 vector was added to standardize the total amount of DNA in each group to 10 μg. 24 hrs after transfection, cells were visualized by fluorescence microscopy.
6- to 8-week old female C57BL/6 mice were purchased from the National Cancer Institute (Frederick, MD) and housed in the animal facility at CRBII, Johns Hopkins School of Medicine (Baltimore, MD). All procedures were performed in accordance with established protocols and recommendations for the proper use and care of laboratory animals.
Biolistic DNA delivery in vivo
DNA-coated gold particles were prepared and delivered by a helium-driven gene gun (BioRad, Hercules, CA) using a method published previously. 0.2 μg of CRT/E7 in combination with 1.8 μg of bic 155 , I 155 , or a control construct were administered to the shaved abdominal region of C57BL/6 mice (3 per group) at a discharge pressure of 400 psi. Mice were boosted at day 7 with the same dose and regimen. At day 14, the animals were sacrificed, and their spleens were explanted for further analysis.
Splenocytes harvested from DNA-bombarded mice were pooled and seeded at 1 × 107 cells/well in 24-well plates. Cells were incubated for 15 hrs in the presence of GolgiStop (Pharmingen, San Diego, CA) with or without 1 μg/ml E7 peptide (amino acids 49-57). Cells were then washed in FACScan buffer, and surface marker detection of CD8 and intracellular cytokine staining for IFN-γ were performed as described . Samples were analyzed on a Becton Dickinson FACSan Flow Cytometer with CellQuest software (BD Biosciences, San Jose, CA).
Data presented as mean ± standard deviation are representative of at least two different experiments. All p-values < 0.05 were considered significant. Statistical analysis was performed using T-test for independent samples with SigmaPlot (Systat software, Inc., San Jose, CA).
List of abbreviations
bic-deficient (bic m/m ), bone marrow-derived DCs
Fas-associated death domain protein
green fluorescence protein
inhibitor of NF-κB
inhibitor of NF-κB kinase
C)): polyriboinosinic:polyribocytidylic acid
receptor-interacting serine-threonine kinase 1
red fluorescence protein
RNA-induced silencing complex
We are grateful to Dr. Richard Roden for helpful discussion and critical review of the manuscript. We would also like to thank Ms. Lucy Wangaruro for excellent secretarial support. This work was supported by the National Cancer Institute SPORE in Cervical Cancer (P50 CA098252) and NIH grant 1 RO1 CA115245-01. Chih-Ping Mao is a recipient of the 2008 Johns Hopkins University Provost's Undergraduate Research Award.
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